FC924987

Overview
NameFC924987
Unique NameFC924987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3753 contig Ccv1_Contig3753:1..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.958e-36
Identity = 78/203 (38.42%), Postives = 118/203 (58.13%), Query Frame = 2
Query:  137 FHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTW----DEIDFEFLGNLSGDPYTLHTNVFTNGKGDK--EQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            F +     +G+G      + + + L LDK +GSGF S + Y  G     +KL    +AG V A+Y  S G  +    DE+D EFLGNL G P+   TN++ NG  ++  E+++ LWFDP+ +FH YSILW P +I+F VD  PIRE    E +   +P+ +PM +Y+++W+A  WAT GG    D+T +PF + +++   D C
Sbjct:   40 FDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYT-SNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGC 240          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.513e-32
Identity = 78/198 (39.39%), Postives = 118/198 (59.60%), Query Frame = 2
Query:  134 NFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            N++Q    TWG  +A ++N    L L+LDK SGSGF+S+  Y  G  ++++K     S G +T++YL S  S  DE+ F+ LG  +G PY L+TN++  G+G K+Q+F LWFDPT D+H+YS LWNP ++VF VD TPIR +  S++  V +P  Q M +  S+ N       G ++  D    P+ A ++    + C
Sbjct:   27 NYYQ----TWGH-QALVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGK-NGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVY--SKNPDVYYPSVQTMFLMGSVQN-------GSII--DPKQMPYIAKFQASKIEGC 207          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  143 QDFDITWGDGRANILNNGQLLTLSLDKASGSGF-----QSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWN---ADDW 643
            Q F+ TW     N  N+G+L  LSL   + + F     +S N Y +G  ++ +K  P  + G V++++     S G+ WDEID EFLG    D   +  N +TNG G  E+  +L FD +  FHTY+  W P  I + VDG      K++ +  +    + P +I  +LWN    D W
Sbjct:   52 QMFNCTWRANNVNFTNDGKL-KLSLTSPANNKFDCGEYRSTNNYGYGLYEVSMK--PAKNTGIVSSFFTYTGPSHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDGV----LKHTATTNI---PSTPGKIMMNLWNGTGVDSW 216          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQL---LTLSL-DKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWN---ADDW 643
            F+ TW     N  N+G+L   LT S  +K   + ++S N Y +G  ++ +K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G  E+   L FD +  FHTY+  W P  I + VDG      K++ +  +    + P +I  +LWN    DDW
Sbjct:   53 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANI---PSTPGKIMMNLWNGTGVDDW 215          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  143 QDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD--KEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSE-----SIGVAFPKNQPMRIYSSLW---------NADDWATRGGLVKTDWTHAPFTASYRNFNA 718
            +DFD T     +   ++G ++     K +GS   S   +L+GK  +++K     S G VTA+ L S  +  DEIDFE+LG   GD  T  +N ++ G  D  + Q+F +  D  A +HTY I W+P RI++ VDG   R     +     S    +P+  PMR+  ++W            +WA  GGL+  DW ++P       F A
Sbjct:  149 EDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTA--RSRGVVTAFDLTS--AIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWDPISKEYRYPQT-PMRLEIAVWPGGSETNGPGTINWA--GGLI--DWENSPDIIEKGQFTA 344          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 56/176 (31.82%), Postives = 83/176 (47.16%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQLLTLSLDKASGSGF-----QSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWN---ADDW 643
            F+  W        N    LT+  D   GSG+     ++KN Y +G   + +K  P  + G V++++     S G+ WDEID EFLG    D   +  N +TNG+G  E   +L FD +  FHTY   W    I + VDGT +  +   ++I      + P +I  + WN    DDW
Sbjct:   61 FNCRWTPNNDKFENGKLKLTIDRD---GSGYTCGEYRTKNYYGYGMFQVNMK--PIKNPGVVSSFFTYTGPSDGTKWDEIDIEFLGY---DTTKVQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAV--YTAYDNI-----PDTPGKIMMNAWNGIGVDDW 221          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 51/177 (28.81%), Postives = 81/177 (45.76%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQLLTLSLDKASGSGFQS---KNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLW---NADDWATR 652
            F+  W   +    N   +LTL  +      ++S   + +  FG    ++++    + G V++++     S  + WDEID EFLG    D   +  N + NG G  E   +L FD + DFHTY   W P  I F VDG  +  ++ + +I V      P +I  +LW     D+W  R
Sbjct:   60 FNCVWKPSQVTFSNGKMILTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGK---DTTKVQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKV--YRGTRNIPVT-----PGKIMMNLWPGIGVDEWLGR 226          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_BACLI (Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQLLTLSLDKASGSGF-----QSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWN---ADDW 643
            F+ TW     ++ + G++  LSL   S + F     +S   Y +G  ++ +K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G+ E+  +L FD    +HTY+  W P  I + VDG    + K++ +  +      P +I  +LWN    D+W
Sbjct:   59 FNCTWRANNVSMTSLGEM-RLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQI---PQTPGKIMMNLWNGAGVDEW 221          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_BACAM (Beta-glucanase OS=Bacillus amyloliquefaciens GN=bglA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.188e-13
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQLLTLSLDKASGSGF-----QSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWN---ADDW 643
            F+ TW     ++ + G++  L+L   S + F     +S   Y +G  ++++K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G+ E+   L FD    +HTY+  W P  I + VDG    + K++ +  +      P +I  +LWN    DDW
Sbjct:   55 FNCTWRANNVSMTSLGEM-RLALTSPSYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTGIVSSFFTYTGPTEGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKFADLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATTQI---PAAPGKIMMNLWNGTGVDDW 217          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_CLOTM (Beta-glucanase OS=Clostridium thermocellum GN=licB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12
Identity = 50/177 (28.25%), Postives = 80/177 (45.20%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQLLTLSLDKASGSGFQS---KNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLW---NADDWATR 652
            F+  W   +    N   +LTL  +      ++S   +++  FG    ++++    + G V++++     S  + WDEID EFLG    D      N + N  G  E   +L FD + DFHTY   W P  I F VDG  +  ++ + +I V      P +I  +LW     D+W  R
Sbjct:   60 FNCVWKPSQVTFSNGKMILTLDREYGGSYPYKSGEYRSKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGK---DTTKAQFNWYKNEVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKV--YRGTRNIPVT-----PGKIMMNLWPGKGVDEWLGR 226          
The following BLAST results are available for this feature:
BLAST of FC924987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
XTH29_ARATH1.958e-3638.42Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH8.513e-3239.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_PAEPO1.319e-1633.15Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
GUB_PAEMA5.014e-1633.14Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
CRR1_YEAST1.905e-1531.73Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
GUB_ORPSP3.593e-1431.82Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]
GUB_CLOTH1.045e-1328.81Beta-glucanase OS=Clostridium thermocellum (strain... [more]
GUB_BACLI1.783e-1330.11Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE... [more]
GUB_BACAM5.188e-1330.11Beta-glucanase OS=Bacillus amyloliquefaciens GN=bg... [more]
GUB_CLOTM1.156e-1228.25Beta-glucanase OS=Clostridium thermocellum GN=licB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA08FM1 TF Citrus clementina cDNA clone KN0AAP8YA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924987 ID=FC924987; Name=FC924987; organism=Citrus clementina; type=EST; length=813bp
CTTTAAAAAATTTCAAACTTCTCTCCAACTCAATTTCTTCTATCTTGTTG
TTGCTCAGACGAAAGCTTCCATGGCTTCAGTATTGCATCTGTCGCTGCTG
CTTCTTGGCTCTTTGATGGTTACCTCTGCTGGTAACTTCCACCAAGATTT
TGATATCACTTGGGGAGACGGGCGTGCTAATATACTCAACAACGGCCAGC
TTCTTACTCTTTCCCTTGATAAAGCCTCTGGCTCCGGCTTCCAGTCCAAG
AATGAGTATCTATTCGGCAAGATTGATATGCAACTCAAACTAGTCCCTGG
CAACTCTGCCGGCACTGTCACTGCTTATTATTTAAAATCGCCAGGATCAA
CATGGGATGAGATAGACTTCGAGTTCTTGGGGAATTTAAGTGGTGACCCT
TACACTCTGCATACCAATGTATTCACAAATGGCAAAGGTGACAAAGAACA
ACAATTTCACCTCTGGTTTGACCCCACTGCTGACTTTCACACCTATTCTA
TCCTCTGGAATCCTCAGCGCATTGTCTTCTCTGTGGATGGTACTCCCATA
AGAGAGTTCAAGAACTCAGAGTCAATTGGAGTTGCATTCCCAAAGAATCA
GCCAATGAGAATATACTCATCTCTCTGGAATGCTGATGACTGGGCTACAA
GAGGTGGCCTTGTCAAGACAGATTGGACGCATGCTCCCTTCACGGCTTCC
TACAGAAACTTCAACGCTGATGCCTGTGTCTGGTCTAATGGAAAATCTTC
TTGCGCTTCAAGTTCACCTTCCTCTCCATCCAGCAGCAGTGCCTGGTTCT
CACAAGAGCTTGA
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