FC924990

Overview
NameFC924990
Unique NameFC924990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 50/181 (27.62%), Postives = 78/181 (43.09%), Query Frame = 3
Query:  120 ATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTPLTR----------PPRTDRSLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVGMDFGIW-TESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNL--RVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYC 614
            +++N ISFV P   I  A   ++ G ++ DFP  P T+          P R    ++   Y   +E+ILQ      + +   H+ GY+F+VVG  FG +    +   YN  D   + T  V    WTA+    +N GVW L   +E    W  G  T   + +        + PP ++  C
Sbjct:  391 SSINNISFVNPSVDILRAYYRHIGGVFQEDFPRNPPTKFNYTGENLPFPTRFGTKVVVLDYNSSVELILQGTTVWASNIHPIHLHGYNFYVVGSGFGNFDRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATW--GMNTVFIVKDGPTKSSRMVKPPPDLPSC 569          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC16_ARATH (Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = 3
Query:  120 ATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTP-----LTRPPRTD--------RSLINATYKGFIEIILQNNDTKMQS---FHMDGYSFFVVGMDFGIWT-ESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 494
            A +N ++F  P+T +  A  +N+ G +  DFP  P      T P +            L    Y   ++I+LQN    +     FH+ G++FF VG   G +  E +  ++N  D + + T  V  G WTAI    DN GVW
Sbjct:  385 AGINNVTFTMPKTALLQAHFFNISGVFTDDFPAKPSNPYDYTAPVKLGVNAATMKGTKLYRLPYNATVQIVLQNTAMILSDNHPFHLHGFNFFEVGRGLGNFNPEKDPKAFNLVDPVERNTVGVPAGGWTAIRFIADNPGVW 526          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC1_ARATH (Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 55/187 (29.41%), Postives = 81/187 (43.32%), Query Frame = 3
Query:  120 ATLNGISFVKPETPIRLADKY---NVKGAYKLDFPNTPLTRPPRTD-------------RSLINATYKGFIEIILQNN---DTKMQSFHMDGYSFFVVGMDFGIWT-ESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW--NLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYC 614
            A++N ISFV+P  PI + + Y     KG + LDFP  P  R   T                L    +   +EI+ Q     + +    H+ G++FFVVG  FG +  E +   YN  D   + T  V  G W AI ++ DN GVW  +  +E    W L     +K  +      T + PP ++  C
Sbjct:  399 ASMNNISFVRP--PISILESYYKKQSKGVFSLDFPEKPPNRFDFTGVDPVSENMNTEFGTKLFEVEFGSRLEIVFQGTSFLNIENHPLHVHGHNFFVVGRGFGNFDPEKDPKRYNLVDPPERNTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSWGLAMGFIVK--DGPLPSQTLLPPPHDLPQC 581          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC15_ARATH (Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 60/207 (28.99%), Postives = 86/207 (41.55%), Query Frame = 3
Query:   78 LRSLPPVTIDG----KVRATLNGISFVKPE-TPIRLADKYNVKGAYKLDFPNTP-------------LTRPPRTDRSLINATYKGFIEIILQNNDTKM----QSFHMDGYSFFVVGMDFG---IWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDR---WYLGQETYMKIVNPEENGDTEMGPPDNVLYC 614
            LR  P  + +G    ++ A++N ISFV P    I  A  Y++KG Y   FP  P                 PR    +    +   +E+++Q             H+ G+SF+VVG+ FG   I  E   + YN +D   K T  V    W AI    DN GVW +   +LDR   W  G      + N  E     + PPD++  C
Sbjct:  360 LRMCPQNSCEGPNGSRLAASMNNISFVTPSHVDILKAYYYHIKGVYGTRFPEFPPLIFNFTAENQPLFLETPRLATEVKVIEFGQVVELVIQGTSLVGGGLDHPMHLHGFSFYVVGVGFGNYNISEEDPSSRYNLYDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHC-HLDRHQTW--GMNVVFIVKNGREPNQQILPPPDDLPPC 563          
The following BLAST results are available for this feature:
BLAST of FC924990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
LAC14_ARATH2.608e-1127.62Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]
LAC16_ARATH7.589e-1130.28Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 S... [more]
LAC1_ARATH9.911e-1129.41Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=... [more]
LAC15_ARATH9.911e-1128.99Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA11FM1 TF Citrus clementina cDNA clone KN0AAP8YA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924990 ID=FC924990; Name=FC924990; organism=Citrus clementina; type=EST; length=774bp
CATCTGCAAGTGGAGCTCGTCCAAATCCGCAGGGTTCTTTTCATTATGGT
TCAATCAATATTACTGATACATATGTGTTAAGGAGTTTGCCACCTGTGAC
AATAGATGGGAAAGTTCGTGCTACGCTGAATGGGATTTCCTTTGTGAAAC
CCGAAACACCAATCAGGCTTGCTGATAAGTACAATGTGAAGGGAGCTTAT
AAGCTAGATTTTCCAAATACGCCACTGACTAGACCTCCCAGGACGGACAG
ATCTCTTATTAATGCTACATACAAGGGATTTATAGAAATCATATTGCAGA
ACAATGACACCAAGATGCAGAGCTTTCACATGGATGGTTATTCATTTTTT
GTTGTTGGGATGGACTTCGGTATATGGACAGAAAGCAACAGAAATAGTTA
TAATAAGTGGGACGCGATTTCTAAGTGTACAACTGAGGTTTATCCTGGGG
CATGGACTGCAATCCTTGTTTCTCTCGATAATGTTGGAGTATGGAATCTT
CGAGTAGAGAACCTTGACAGATGGTATCTAGGCCAAGAAACATATATGAA
AATTGTCAATCCAGAGGAAAATGGCGATACCGAGATGGGACCTCCTGATA
ATGTTTTATATTGTGGTGCCCTTCAAAGCAAGCAGAAGGCACAAAAACGT
CATCACTCTTCTGCAACATCACTTGTAACTGGAATCTGGAATCTCGTCCT
TACTTTGGTGATGGCAGTCTCTGCTGGAATTTTGCTCTGCTGATAGGTAA
CGAACTGAAAAAAAAAAAAAAAAA
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