FC924991

Overview
NameFC924991
Unique NameFC924991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3755 contig Ccv1_Contig3755:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.105e-26
Identity = 66/187 (35.29%), Postives = 115/187 (61.50%), Query Frame = 3
Query:  288 STQVKAFVTIKPSVGGLVSGFVDDVKDMF----GKSLLLELVSAELDPKTGAEKPTIK----GFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            S  V A V I+  +   ++   +   ++F    G+ +L++LVS E+DP+TG  + +++    G      + +  ++++ + F VP +FG+ GAILV N    E+ L++I+++   +  +     +W+ SK+ N Q RI F ++  LPS+TP+G+  LR ++L+++RGDG+GERK  +RIYDYDVYND
Sbjct:   79 SKTVTAVVKIRKKIKEKLTERFEHQLELFMKAIGQGMLIQLVSEEIDPETGKGRKSLESPVMGLPKAVKDPR--YLVFTADFTVPINFGKPGAILVTNLLSTEICLSEIIIEDSTD-TILFPANTWIHSKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKPHERIYDYDVYND 262          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.884e-26
Identity = 72/181 (39.78%), Postives = 94/181 (51.93%), Query Frame = 3
Query:  318 KPSVGGL-------VSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            K +VGGL       V   +D++    G+S+ L+L+SA      G  K      ++G          G   +  +FE   S G  GA  ++N    E YL  + L D P  G +   C SWV +  + K  RIFF N +Y+PS+TP  L   R EEL NLRGDG+GERK  DRIYDYDVYND
Sbjct:   41 KGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISATKPLANGKGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEWDESMGIPGAFYIKNYMQVEFYLKSLTLEDVPNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAALVGYREEELKNLRGDGKGERKEHDRIYDYDVYND 221          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.221e-25
Identity = 67/171 (39.18%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  336 LVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHR-------AGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +V G VD    +F +++ ++L+SA      G  K   + F  +        G+ +D   +Y   FE   +FG   A  ++N    E +L  + L D P +G ++  C SWV +    K+ RIFF NK+YLP++TP  L + R EEL NLRGDG GERK  DRIYDY VYND
Sbjct:   50 IVGGIVDGATAIFSRNIAIQLISATKTDGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVY---FEWDENFGIPEAFYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYLPNETPASLVKYRKEELENLRGDGTGERKEYDRIYDYAVYND 217          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.595e-25
Identity = 65/168 (38.69%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  336 LVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            ++   +D +    G+S+ L+L+SA      G  K      ++G          G   +   FE     G  GA  ++N    E +L  + L D P +G +   C SWV +  + K  RIFF NKSYLPS+TP+ L + R EEL  LRGDG GERK  +RIYDYDVYND
Sbjct:   50 IIGSTLDGLTAFLGRSVSLQLISATKSDANGKGKVGKDTFLEGVLASLPTLGAGESAFNIHFEWDHEMGIPGAFYIKNYMQVEFFLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKSPRIFFANKSYLPSETPSPLVKYREEELQTLRGDGTGERKLHERIYDYDVYND 217          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.554e-25
Identity = 76/205 (37.07%), Postives = 101/205 (49.27%), Query Frame = 3
Query:  276 FTQKSTQVKAFVTIKP----------SVGGLVS---GFVDDVKDMF---GKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDK-----DGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            F QK  ++K  + +            SVGG+V    GF+    D        + ++L+SA    K    K  I    +  G+        G   Y+  FE    FG  GA  ++N    E YL  ++L D P +G ++  C SWV +    K  RIFF N +YLPS+TP  L + R EEL N+RGDG GERK  DRIYDYDVYND
Sbjct:    4 FGQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATKISIQLISAT---KADGGKGKIGKSTNLRGKITLPTLGAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYND 205          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.641e-25
Identity = 70/179 (39.11%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  324 SVGGLVS-GF------VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDG-PRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            +VGG++  GF      VD++    G+S+ L+L+SA     TG  K      ++G          G   ++  FE     G  GA  ++N    E +L  + LD  P +G +   C SW+ +   +K  RIFF N++YLPS+TP  L   R EEL NLRGDG GERK  +RIYDYDVYND
Sbjct:   34 TVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISATKPDATGKGKLGKATFLEGIISSLPTLGAGQSAFKIHFEWDDDMGIPGAFYIKNFMQTEFFLVSLTLDDIPNHGSIYFVCNSWIYNAKHHKIDRIFFANQTYLPSETPAPLVHYREEELNNLRGDGTGERKEWERIYDYDVYND 212          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.008e-24
Identity = 67/179 (37.43%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  324 SVGG-------LVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            SVGG       LV   +D +    G+ + L+L+SA      G  K      ++G          G   ++  FE     G +GA  ++N    E +L  + L D P +G ++  C SW+ +  + K  RIFF N++YLPS+TP  L + R EEL NLRGDG GERK  +R+YDYDVYND
Sbjct:   31 SVGGIIGQGLDLVGSTLDTLTAFLGRPVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGILGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERVYDYDVYND 209          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.143e-23
Identity = 67/171 (39.18%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  336 LVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHR-------AGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            LV G +D      G+++ ++L+SA     +G  K   + +  +        G  +D   I+   FE   SFG  GA  ++N    E +L  + L D P +G +   C SWV +    K+ RIFF N +YLPS TP  L + R EEL  LRGDG G+RK  DRIYDYDVYND
Sbjct:   50 LVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIF---FEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYND 217          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.143e-23
Identity = 62/170 (36.47%), Postives = 88/170 (51.76%), Query Frame = 3
Query:  336 LVSGFVDDVKDMFGKSLLLELVSA-ELDPKTGAE-----KPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            L     D + +  G+ +  +L+S+ + DP  G +        ++ F         G   +   F+    FG  GA +++N H  E +L  + L D P +G V+  C SWV      K  RIFF N+ YLPS+TP  L + R  EL+ LRGDG G+R+  DRIYDYDVYND
Sbjct:   36 LAGSLTDKIFEALGQKVSFQLISSVQSDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDWNEEFGVPGAFVIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSFRYKSDRIFFANQPYLPSETPELLRKYRENELVTLRGDGTGKREAWDRIYDYDVYND 205          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.547e-23
Identity = 65/172 (37.79%), Postives = 86/172 (50.00%), Query Frame = 3
Query:  327 VGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPT----IKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVEN-EHHKEMYLNDIVLDG-PRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            VG +    +D      G+S+ L L+SA +   +G  K +    ++G         D    +   FE   + G  GA  +EN     E +L  + LD  P  G +   C SW+ +    +  RIFF NK+YLPS TP  L   R EEL  LRGDG GER+  DRIYDYDVYND
Sbjct:   46 VGSIAGSIIDTATAFLGRSVRLRLISATVADASGKGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEWDSNMGTPGAFYIENFMQGGEFFLVSLTLDDVPNVGSIKFACNSWIYNDKKYQSDRIFFANKTYLPSATPAPLVSYRQEELKTLRGDGTGERQEWDRIYDYDVYND 217          
The following BLAST results are available for this feature:
BLAST of FC924991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX6_ARATH1.105e-2635.29Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX2_SOYBN1.884e-2639.78Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOXA_PHAVU1.221e-2539.18Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX2_PEA1.595e-2538.69Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX4_SOYBN3.554e-2537.07Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX3_PEA4.641e-2539.11Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_SOYBN3.008e-2437.43Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOXX_SOYBN1.143e-2339.18Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXA_SOLLC1.143e-2336.47Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_LENCU2.547e-2337.79Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA13FM1 TF Citrus clementina cDNA clone KN0AAP8YA13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924991 ID=FC924991; Name=FC924991; organism=Citrus clementina; type=EST; length=825bp
TCTCTATAAAAATAGTGGATTCTTCTGCACTTCAGCATCACAGAGCTAGC
CAAGAAAATTAAGTATCAAGCATATCCTATACTCCTGAAAGAATGTTGAA
GCCACAAGTCCATCAGTCTCATCAATCTCTCAAACCCCTAGTTCCATTAT
CCAAGCCATTTCTCCGGGGAAATTTTCATGCTTTTCGTGCACTTCAGTCA
AGTAGTTCAATAAAAAATATACCCAAAATTAGAATTGGGATATCTCCTAG
TGTGAATATCAAAGCAATAACAACTTTTACTCAAAAGTCTACCCAAGTTA
AGGCTTTTGTCACTATTAAACCCTCTGTTGGTGGTCTTGTCTCAGGTTTT
GTAGACGATGTAAAGGATATGTTTGGTAAATCACTCCTGCTGGAGCTTGT
TAGCGCTGAGCTTGATCCTAAGACGGGAGCAGAGAAGCCCACCATCAAAG
GTTTTGCACACAGAGCGGGCGAGGATAAGGACGGACACATAATATACGAG
TCAAAATTCGAAGTTCCACCAAGTTTTGGAGAAGTTGGTGCCATATTGGT
GGAAAATGAGCACCACAAAGAGATGTATTTGAATGATATTGTTCTGGATG
GTCCCCGGAATGGTCCTGTGAACATAACATGTGGTTCATGGGTTCAGTCA
AAGCACGTTAACAAACAGAAGAGAATTTTCTTTACAAACAAGTCATACTT
GCCTTCACAAACCCCTAATGGATTGACGAGGCTAAGAGCTGAAGAACTTC
TTAATCTGCGAGGAGACGGACAAGGAGAGCGCAAAACTCAAGATAGAATT
TACGATTATGACGTGTACAATGATC
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