FC924991

Overview
NameFC924991
Unique NameFC924991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.673e-23
Identity = 61/170 (35.88%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  342 SGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGED--------KDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            + F+D + +  G  + L LVS+++       K  +   AH   ED          G   ++  F+    FG  GA L+ N H  E  L  + L D P +G V+  C SW+         R+FF+NK+YLP +TP  L + R EEL++LRG G+GE K  DR+YDY  YND
Sbjct:   40 ASFLDRLHEFLGNKITLRLVSSDVTDSENGSKGKLGKAAHL--EDWITTITSLTAGESAFKVTFDYETDFGYPGAFLIRNSHFSEFLLKSLTLEDVPGHGRVHYICNSWIYPAKHYTTDRVFFSNKTYLPHETPATLLKYREEELVSLRGTGEGELKEWDRVYDYAYYND 207          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.264e-22
Identity = 63/163 (38.65%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  351 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            VD++    G+S+ L+L+SA      G  K      ++G          G   +   FE   S G  GA  ++N    E +L  + L+   N G +   C SWV +  + K  RIFF N +Y+PS+TP  L   R EEL +LRG+G GERK  DRIYDYDVYND
Sbjct:   29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYND 191          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.156e-22
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  507 FEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            F+    FG  GA +++N H  E +L  + L D P +G V+  C SWV      K  RIFF N+ YLPS+TP  L + R  ELL LRGDG G+R+  DRIYDYD+YND
Sbjct:  100 FDWNEEFGVPGAFIIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSLNYKSDRIFFANQPYLPSETPELLRKYRENELLTLRGDGTGKREAWDRIYDYDIYND 206          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.816e-22
Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  537 GAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            GA  ++N    E YL  + L D P +G ++  C SW+ +  V K  RIFF N +YLPS+TP  L + R EEL N+RGDG GERK  DR+YDYDVYND
Sbjct:    3 GAFYIKNFMQVEFYLKSLTLEDIPNHGTIHFICNSWIYNSKVYKSDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGSGERKEWDRVYDYDVYND 99          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 58/164 (35.37%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  351 VDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVP-----PSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTQDRIYDYDVYND 824
            VD + D+ G+ + ++L+S  ++      K +   +      D       ES F V        FG  GA +++N H  E +L  + L D P  G ++  C SWV      K  RIFF N++YLPS+TP  L + R  EL+ LRGDG G+ +  DR+YDY  YND
Sbjct:   41 VDGISDLLGQKVSIQLISGSVNYDGLEGKLSNPAYLESWLTDITPITAGESTFSVTFDWDRDEFGVPGAFIIKNLHLNEFFLKSLTLEDVPNYGKIHFVCNSWVYPAFRYKSDRIFFANQAYLPSETPQPLRKYRENELVALRGDGTGKLEEWDRVYDYACYND 204          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 58/176 (32.95%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  336 LVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHR---AGEDKDGHIIYESKFEVP----PSFGEVGAILVENEHHKEMYLNDIVLDGPRNGP-----VNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQ-GERKTQDRIYDYDVYND 824
            +++  +D V ++ G+ + L L+S+        ++  +   AH      + K      E+ F V      S G   A +++N HH + YL  + L G  +G      ++  C SW+   H  +  R+FF+NK+YLPS+TP  +  LR EEL NLRG+ + GE K  DR+YDY  YND
Sbjct:   52 VMASLLDRVNELLGRRVSLHLISSHQPDPANEKRGRLGKAAHLEKWVTKIKTSVTAEETAFGVTFDWDESMGPPAAFVIKNHHHSQFYLKSLTLRGFPDGEGGATAIHFICNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEELKNLRGNEKGGEFKEWDRVYDYAYYND 227          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 64/173 (36.99%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  351 VDDVKDMFGKSLLLELVSAE-LDP------KTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVP-----PSFGEVGAILVENEHHKEMYLNDIVLDGP--RNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDG-QGERKTQDRIYDYDVYND 824
            +D + +  GK +  +L+S+  +DP      K GAE    +           G    ES+F V         G  GAI+V+N H  E +L  I LD    R G V     SWV      +  R+FF N +YLPSQ P  L   R +EL NLRGD  QG  +  DR+Y YDVYND
Sbjct:   40 IDGLGEFLGKGVTCQLISSTAVDPNNGNRGKVGAEASLEQWLTSSLPSLTTG----ESRFGVTFDWDVDKLGVPGAIIVKNHHSNEFFLKTITLDDVPGRAGAVVFLANSWVYPADKYRYDRVFFANDAYLPSQMPAALKPYRDDELRNLRGDDQQGPYEEHDRVYRYDVYND 208          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 61/171 (35.67%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  351 VDDVKDMFGKSLLLELVSAEL-DPKTG----------AEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDG-PRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDG-QGERKTQDRIYDYDVYND 824
            +D + +  G+ +  +LVS+ L DP  G           E+      +   GE K G + +E + E     G  GAI+V+N H  E +L  I LD  P +G V     SW+      +  R+FF+N + LPS+ P  L   R +EL NLRGD  QG  +  DR+Y YDVYND
Sbjct:   39 IDGISEFLGRGVTCQLVSSSLVDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFG-VTFEWEVE---KMGIPGAIIVKNNHAAEFFLKTITLDNVPGHGAVVFVANSWIYPASKYRYNRVFFSNDTSLPSKMPAALKPYRDDELRNLRGDDQQGPYQEHDRVYRYDVYND 205          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.562e-17
Identity = 62/176 (35.23%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  327 VGGLVSGFVDDVKDMFG--KSLLLELVSAEL-DPKTGAE----KPT-IKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDG-PRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQ-GERKTQDRIYDYDVYND 824
            +G   +  +D V ++ G  + +   LVSA   DP  G      KP  ++           G  ++   FE   S G  GA++V N +  E +L  + LDG P  G V     SW+      + +R+FF N +YLPS+ P  L   R EEL  LRGDG+ G  K  DRIY YD YND
Sbjct:   37 LGDFHASLLDGVHNILGHKEGVAFRLVSATARDPSNGGRGKLGKPAHLEELVVTMKSTAAGESVFRVAFEWDESQGIPGAVVVTNSNRSEFFLKTLTLDGVPGKGTVVFVANSWIYPADNYQYERVFFANDTYLPSKMPAPLIPYRQEELNILRGDGKIGPYKEHDRIYRYDYYND 212          
BLAST of FC924991 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.309e-16
Identity = 57/170 (33.53%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  342 SGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSF-------GEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRG-DGQGERKTQDRIYDYDVYND 824
            +  +D+V ++FG S+  +LVSA +  +    +  +   A+      D   + + + ++   F       G  GAI+++N H  + +L  I L D P    +     SW+         RIFF N SYLPSQ P  L   R +EL  LRG D QG  +  DRIY YDVYND
Sbjct:   36 ASLLDNVHEVFGNSITCQLVSATVADQNNEGRGIVGSEANLEQGLTDLPSVSQGESKLTVRFNWEMDKHGVPGAIIIKNHHSTKFFLKTITLHDVPGCDTIVFVANSWIYPVGKYHYNRIFFANNSYLPSQMPEALRPYREDELRYLRGEDRQGPYQEHDRIYRYDVYND 205          
The following BLAST results are available for this feature:
BLAST of FC924991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_ARATH5.673e-2335.88Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX1_SOYBN1.264e-2238.65Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_SOLTU2.156e-2248.60Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXB_PHAVU2.816e-2251.55Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXB_SOLLC9.058e-2135.37Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX5_ARATH3.442e-2032.95Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ORYSJ2.088e-1736.99Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX2_ORYSJ2.088e-1735.67Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX4_ORYSJ3.562e-1735.23Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX1_ORYSJ2.309e-1633.53Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA13FM1 TF Citrus clementina cDNA clone KN0AAP8YA13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924991 ID=FC924991; Name=FC924991; organism=Citrus clementina; type=EST; length=825bp
TCTCTATAAAAATAGTGGATTCTTCTGCACTTCAGCATCACAGAGCTAGC
CAAGAAAATTAAGTATCAAGCATATCCTATACTCCTGAAAGAATGTTGAA
GCCACAAGTCCATCAGTCTCATCAATCTCTCAAACCCCTAGTTCCATTAT
CCAAGCCATTTCTCCGGGGAAATTTTCATGCTTTTCGTGCACTTCAGTCA
AGTAGTTCAATAAAAAATATACCCAAAATTAGAATTGGGATATCTCCTAG
TGTGAATATCAAAGCAATAACAACTTTTACTCAAAAGTCTACCCAAGTTA
AGGCTTTTGTCACTATTAAACCCTCTGTTGGTGGTCTTGTCTCAGGTTTT
GTAGACGATGTAAAGGATATGTTTGGTAAATCACTCCTGCTGGAGCTTGT
TAGCGCTGAGCTTGATCCTAAGACGGGAGCAGAGAAGCCCACCATCAAAG
GTTTTGCACACAGAGCGGGCGAGGATAAGGACGGACACATAATATACGAG
TCAAAATTCGAAGTTCCACCAAGTTTTGGAGAAGTTGGTGCCATATTGGT
GGAAAATGAGCACCACAAAGAGATGTATTTGAATGATATTGTTCTGGATG
GTCCCCGGAATGGTCCTGTGAACATAACATGTGGTTCATGGGTTCAGTCA
AAGCACGTTAACAAACAGAAGAGAATTTTCTTTACAAACAAGTCATACTT
GCCTTCACAAACCCCTAATGGATTGACGAGGCTAAGAGCTGAAGAACTTC
TTAATCTGCGAGGAGACGGACAAGGAGAGCGCAAAACTCAAGATAGAATT
TACGATTATGACGTGTACAATGATC
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