FC924992

Overview
NameFC924992
Unique NameFC924992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8946 contig Ccv1_Contig8946:179..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924992 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1
Query:  196 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 354
            K+P SKDRH+KV+GRGRRIRMP  CAARVFQLTRELGHKSDG+TI WLL +AE
Sbjct:   53 KRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105          
BLAST of FC924992 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  181 GALTVKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 354
            G   V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct:   64 GMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of FC924992 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  181 GALTVKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 354
            G   V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct:   64 GMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of FC924992 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   85 LPGAHMSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 354
            +  A   +SDGAT          P+R +P        K P S DRHSKV GRGRR+R+P + AARVFQLTRELGH++DG+TIEWLLRQAE
Sbjct:   32 IAAAEPPSSDGAT----------PRRVRPR-------KSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAE 104          
BLAST of FC924992 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 38/53 (71.70%), Postives = 49/53 (92.45%), Query Frame = 1
Query:  196 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 354
            KK P+KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHKSDG+T+EWLL+ AE
Sbjct:   64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAE 116          
BLAST of FC924992 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  175 GNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 354
            G G ++ +   +KDRH+KV+GR RR+ MP + AAR+FQLTRELGHK++G+TIEWLL QAE
Sbjct:   35 GGGCISAR---TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAE 91          
The following BLAST results are available for this feature:
BLAST of FC924992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TCP19_ARATH9.905e-1981.13Transcription factor TCP19 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ9.905e-1971.67Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI9.905e-1971.67Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
PCF1_ORYSJ2.882e-1855.56Transcription factor PCF1 OS=Oryza sativa subsp. j... [more]
TCP6_ARATH6.420e-1871.70Transcription factor TCP6 OS=Arabidopsis thaliana ... [more]
TCP11_ARATH2.982e-1561.67Transcription factor TCP11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA14FM1 TF Citrus clementina cDNA clone KN0AAP8YA14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924992 ID=FC924992; Name=FC924992; organism=Citrus clementina; type=EST; length=663bp
CACATTAATCATTCACGCTCTTTCTCTCTCTAACACTCTTTTAACTACTT
CAACAAACCCTAAAGCTTTTATCTTCGCCAAATTCTACCTGGTGCTCATA
TGTCTAATTCGGACGGTGCCACTAACGGCGTCTCCAACGGCGCTATTATT
GACCCCCAGAGACAGCAGCCTCCTGGTAATGGCGCGTTAACCGTCAAGAA
GCCGCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCAGGAGAA
TCCGCATGCCGATCATTTGCGCAGCGCGTGTTTTCCAGTTGACTCGCGAG
CTCGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTTCTCCGCCAAGC
CGAGCCCTCAATCATTGCTGCCACGGGGACGGGTACCACTCCGGCTAGCT
TCTCCACTGTCTCGGTGTCGGTTCGCGGCGGAGGGAACTCGACTTCCTTG
TCGTCGACGGTGTCTTCTTCGGCTATCTCCGCTGCGTTGGAACATAAGCC
CTCGCTGGGTCCCGCCCCGTTCATTCTTGGAAAACGCGTGAGGTCCGACG
ATGATGGGACCAAAGGGGAAGATTCCATTTCTGCCGTGGGTCCTGCCACG
GTGGGGCCGATAGTGGGCCCTGCGACTCCAGGTGGCGGGTTCTGGGCTTT
GCCGGCCAGGCCG
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