FC924994

Overview
NameFC924994
Unique NameFC924994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+DKKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.198e-34
Identity = 70/113 (61.95%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  146 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            SFK ++ L+ RLAES  I  KYP RIPVI EK  KTD+P I+KKK+LVP D+SVGQF+Y++  R+ LS  KA+FVFV NTLP T ALM ++YE  KD+DGF+YM YS E TFG
Sbjct:    3 SFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K  +K  HP E R  E  +IR+KYPDR+P+IVEKA K  VPD+D++KYLVP+DL+ GQF  ++RKRI L  E A+F FV NT+PPT A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 2
Query:  140 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            K ++K E+  E+R AE  +IR KYPDRIPVIVEKA K+ + D+DKKKYLVP+DL+VGQF +++RKRI+L  E A+F FV N +P T   M  +Y+++ +ED FLY+ YS E+ +G
Sbjct:    2 KWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 2
Query:  134 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE-DGFLYMTYSGENTFG 484
            M    FK E  LE R  ESA +   YPDRIPVIVEK  ++++P+++K+KYLVP ++ VGQF++++R R+ LS   A+FVFV NTLP T  LM ++YE  KDE DGFLY+ YS E TFG
Sbjct:    1 MKPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
The following BLAST results are available for this feature:
BLAST of FC924994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_BOVIN8.458e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT3.214e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT3.214e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE3.214e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN3.214e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN3.214e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH4.198e-3461.95Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRL3_HUMAN3.929e-3254.78Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL2.816e-3053.91Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8D_ORYSJ4.803e-3054.24Autophagy-related protein 8D OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA19FM1 TF Citrus clementina cDNA clone KN0AAP8YA19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924994 ID=FC924994; Name=FC924994; organism=Citrus clementina; type=EST; length=705bp
CAAAATAAATTCTCCTTAATCAACCGATCAATCAATCAATCAATCAAATA
CCTTGAAACCCTGCTAATTTCCTTCTCTTCTCCGATCCACTTCTCGTGTC
GTGTTGAAGAGTCATCGTAGCGTCAGTTTCGCCATGGCCAAAAGTTCATT
CAAGCTCGAGCATCCATTGGAGAGGAGGCTAGCAGAATCTGCTCGCATTA
GAGAGAAGTATCCTGATAGGATTCCGGTGATTGTGGAGAAGGCTGAGAAG
ACTGATGTTCCTGACATTGACAAGAAAAAATACCTTGTCCCAGCGGATTT
ATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGATTAAGCTCAGTG
CAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTACCTCCAACCGGT
GCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGAAGATGGTTTTCT
TTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGTCATTTTAAGAGC
AAAGGCAACAAGCCATGTATCATAAAATTTGAAAGTTGTATATTCTCAGT
TGATCCCTTTTAAGCCATTCCCAGACATGTTCACTGATATCTTGTTTTTA
TTTTGGGTTGATTGCATCAGTTGATGATAGAAGTAACTCTTGTTAAAATT
GTCCGTTAGTGGTAGATATTGAATGGAGGAAACTAATTTACTAGTAATAC
TGATT
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