FC924994

Overview
NameFC924994
Unique NameFC924994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 2
Query:  131 AMAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLS---AEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            A+   SFK E+ LE+R   S++IR +Y DR+P+IVE+A  +DVPDI+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP+  L+S+IY+ +KDEDGFLY+ YSGENTFG
Sbjct:    2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 2
Query:  146 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            SFK +   + RL ES  I  KYPDRIPVI+EK    D+PD++K KYLVP D++VG F++++ KR++L   KA+FVFV NTLP T + M ++Y   K+EDGFLYM YS E TFG
Sbjct:    7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  149 FKLEHPLERRLAESARIREKYPDRIPVIVEK-AEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKN-TLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            FK    L  R  E A IR K+P++IPV+VE+   +T +P +DK K+LVP +L++ QF+ ++R R+ L A +A ++ V N +L    A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 46/119 (38.66%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  137 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  137 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 45/119 (37.82%), Postives = 79/119 (66.39%), Query Frame = 2
Query:  137 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  +DEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 2
Query:  137 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +  +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 2
Query:  137 AKSSFKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVK-NTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 484
            ++ +FK     E+R+ +   IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + + ++R+R++L+A +A F+ V  +++      +S +YE  KDEDGFLYM  + + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 46/116 (39.66%), Postives = 76/116 (65.52%), Query Frame = 2
Query:  149 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 487
            FK       R  E  +IRE++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of FC924994 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 2
Query:  149 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 487
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
The following BLAST results are available for this feature:
BLAST of FC924994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8L_DICDI6.272e-3052.46Autophagy-related protein 8-like protein DDB_G0290... [more]
ATG8H_ARATH6.272e-3054.87Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
MLP3C_HUMAN4.506e-2044.74Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN8.497e-1938.66Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT1.893e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE1.893e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN3.229e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN9.395e-1837.82Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.602e-1739.66Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT3.570e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA19FM1 TF Citrus clementina cDNA clone KN0AAP8YA19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924994 ID=FC924994; Name=FC924994; organism=Citrus clementina; type=EST; length=705bp
CAAAATAAATTCTCCTTAATCAACCGATCAATCAATCAATCAATCAAATA
CCTTGAAACCCTGCTAATTTCCTTCTCTTCTCCGATCCACTTCTCGTGTC
GTGTTGAAGAGTCATCGTAGCGTCAGTTTCGCCATGGCCAAAAGTTCATT
CAAGCTCGAGCATCCATTGGAGAGGAGGCTAGCAGAATCTGCTCGCATTA
GAGAGAAGTATCCTGATAGGATTCCGGTGATTGTGGAGAAGGCTGAGAAG
ACTGATGTTCCTGACATTGACAAGAAAAAATACCTTGTCCCAGCGGATTT
ATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGATTAAGCTCAGTG
CAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTACCTCCAACCGGT
GCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGAAGATGGTTTTCT
TTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGTCATTTTAAGAGC
AAAGGCAACAAGCCATGTATCATAAAATTTGAAAGTTGTATATTCTCAGT
TGATCCCTTTTAAGCCATTCCCAGACATGTTCACTGATATCTTGTTTTTA
TTTTGGGTTGATTGCATCAGTTGATGATAGAAGTAACTCTTGTTAAAATT
GTCCGTTAGTGGTAGATATTGAATGGAGGAAACTAATTTACTAGTAATAC
TGATT
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