FC925008

Overview
NameFC925008
Unique NameFC925008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEDU (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus ducreyi GN=gnd PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.603e-37
Identity = 79/160 (49.38%), Postives = 108/160 (67.50%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            IG+ GLAVMGQNL LN+ + GF +  YNRT SKVDE +    K  D  + G    E     ++KPR I+++V+AG  VD+ I  L  ++E GD IIDGGN  Y +T RR   +AE G+ ++G GVSGGEEGARHGPS+MPGG+ EA+ +++ IL  ++A+
Sbjct:    7 IGVIGLAVMGQNLILNMNDNGFKVVAYNRTASKVDEFLAGEAK--DTNIIGAYSLEDLAAKLEKPRKIMLMVRAGEVVDQFIDALLPHLEAGDIIIDGGNSNYPDTNRRTITLAEKGIRFIGTGVSGGEEGARHGPSIMPGGNEEAWPFVKPILQAISAK 164          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_DROME (6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila melanogaster GN=Pgd PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.574e-37
Identity = 81/160 (50.62%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            I L GLAVMGQNL LN+ EKGF +  YNRT +KV E +    K  D  + G    E  V+ ++ PR +++LVKAG+ VD+ I+ L   +  GD IIDGGN  Y++T RR   +A+LGLL++G GVSGGEEGARHGPSLMPGG   A+  I+ I   + A+
Sbjct:    7 IALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFLANEAK--DTKVIGADSLEDMVSKLKSPRKVMLLVKAGSAVDDFIQQLVPLLSAGDVIIDGGNSEYQDTSRRCDELAKLGLLFVGSGVSGGEEGARHGPSLMPGGHEAAWPLIQPIFQAICAK 164          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_DICDI (6-phosphogluconate dehydrogenase, decarboxylating OS=Dictyostelium discoideum GN=gnd PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.574e-37
Identity = 80/161 (49.69%), Postives = 111/161 (68.94%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            IGL GLAVMG+NL LN+  +GF  SVYNRTTSKVDE V+   K       G    E+ V S++ PR ++++VKAG  VD  I+ L   +EKGD IIDGGN  Y +++RR K +   G+L++G GVSGGEEGA  GPS+MPGG+ +A+++++ I   ++A+V
Sbjct:    8 IGLIGLAVMGENLVLNMESRGFTCSVYNRTTSKVDEFVQGRGK--GKKFIGCHSLETLVQSLKTPRRVMLMVKAGEVVDHFIQLLLPLLEKGDIIIDGGNSLYTDSDRRTKDLDAKGILFIGTGVSGGEEGALLGPSIMPGGNPKAWEHVKPIFQAISAKV 166          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_SALTY (6-phosphogluconate dehydrogenase, decarboxylating OS=Salmonella typhimurium GN=gnd PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.292e-36
Identity = 74/160 (46.25%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 633
            +IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +     +  +P +  ++   FV S++ PR I+++VKAGA  D  I +L  Y+EKGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  +AY+ +  IL K+AA
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVKE---FVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIAA 161          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_ECOLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.687e-36
Identity = 73/160 (45.62%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 633
            +IG+ G+AVMG+NLALNI  +G+ +S++NR+  K +E +     +  +P +  ++   FV S++ PR I+++VKAGA  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  EAY+ +  IL K+AA
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---FVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAA 161          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_BACSU (6-phosphogluconate dehydrogenase, decarboxylating OS=Bacillus subtilis GN=gntZ PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.687e-36
Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            IG+ GL VMG N+ALN+A KG  ++VYN T    D+ +++   +   P +   D   FV S++KPR I ++V AG PVD  I++L   +E+GD I+DGGN  YE+TERR   + E G+ YLG+G+SGGE GA  GPS+MPGG  + Y+    IL K+AAQV
Sbjct:    5 IGVIGLGVMGSNIALNMANKGENVAVYNYTRDLTDQLIQKLDGQSLSPYYELED---FVQSLEKPRKIFLMVTAGKPVDSVIQSLKPLLEEGDVIMDGGNSHYEDTERRYDELKEKGIGYLGVGISGGEVGALTGPSIMPGGDRDVYEKAAPILTKIAAQV 162          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.204e-36
Identity = 79/161 (49.07%), Postives = 107/161 (66.46%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            +IG+ GLAVMG+NLA NI  +G+ +SVYNR+  K DE V+ +      P +     E FV S++KPR I+++VKAG   D TI  L   ++  D +IDGGN  Y++T RR KA+AE  + ++GMGVSGGE GA  GPSLMPGG  +AY  + DIL  +AA+
Sbjct:    4 QIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGREIYPTYSL---EEFVESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRRNKALAESSINFIGMGVSGGEIGALTGPSLMPGGQKDAYNKVSDILDAIAAK 161          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.204e-36
Identity = 79/161 (49.07%), Postives = 107/161 (66.46%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            +IG+ GLAVMG+NLA NI  +G+ +SVYNR+  K DE V+ +      P +     E FV S++KPR I+++VKAG   D TI  L   ++  D +IDGGN  Y++T RR KA+AE  + ++GMGVSGGE GA  GPSLMPGG  +AY  + DIL  +AA+
Sbjct:    4 QIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGREIYPTYSL---EEFVESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRRNKALAESSINFIGMGVSGGEIGALTGPSLMPGGQKDAYNKVSDILDAIAAK 161          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIFL (6-phosphogluconate dehydrogenase, decarboxylating OS=Shigella flexneri GN=gnd PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.878e-36
Identity = 73/160 (45.62%), Postives = 110/160 (68.75%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 633
            +IG+ G+AVMG+NLALNI  +G+ +S++NR+  K +E +     +   P +  ++   FV S++ PR I+++VKAGA  D  I +L  Y++KGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  EAY+ +  IL K+AA
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLAPYYTVKE---FVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAA 161          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_RAT (6-phosphogluconate dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Pgd PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.759e-36
Identity = 79/161 (49.07%), Postives = 111/161 (68.94%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ +  AK+     + G +  +  V+ ++KPR +I+LVKAG  VD+ I+ L   ++ GD IIDGGN  Y +T RR + +   G+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I   +AA+V
Sbjct:    6 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--AKEAKGTKVIGAKSLKDMVSKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCQDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQAIAAKV 164          
The following BLAST results are available for this feature:
BLAST of FC925008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_HAEDU2.603e-3749.386-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DROME7.574e-3750.636-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DICDI7.574e-3749.696-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SALTY1.292e-3646.256-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ECOLI1.687e-3645.636-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BACSU1.687e-3647.836-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES2.204e-3649.076-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ2.204e-3649.076-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHIFL2.878e-3645.636-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_RAT3.759e-3649.076-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YO06FM1 TF Citrus clementina cDNA clone KN0AAP1YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925008 ID=FC925008; Name=FC925008; organism=Citrus clementina; type=EST; length=640bp
TTATGTTTATAGAGTCTCTGCTCTGCTAATCCCAGATCACATTTTGGGTT
GATTTGTCTGAATTTTCATTCTCTTGTTTTTGCATCAGATTTTAGAAGAA
GAAGAAGAAGAATTTTTTAAGAGGAAGATATGGTTGAGGGCAAACAACTT
ACGAGAATAGGCCTTGCTGGTCTGGCGGTCATGGGCCAAAATCTCGCCCT
CAACATTGCTGAAAAAGGCTTTCCCATTTCTGTTTATAACCGAACTACCT
CCAAAGTTGATGAGACAGTTGAAAGAGCTAAAAAGGAGGGAGATTTGCCT
TTATTTGGTTTCCGTGATCCTGAATCATTTGTCAATTCAATCCAAAAACC
TCGGGTGATAATCATGCTTGTTAAAGCTGGTGCACCTGTTGACGAAACCA
TTAAGACCCTCTCTGCTTACATGGAGAAAGGTGATTGCATCATTGATGGG
GGTAATGAGTGGTATGAGAACACCGAGAGAAGAGAGAAAGCCATGGCTGA
ATTGGGTTTGCTCTACCTTGGAATGGGAGTTTCAGGTGGTGAAGAGGGTG
CAAGACATGGTCCTTCTTTGATGCCTGGAGGATCATTCGAGGCTTACAAG
TATATTGAAGACATTCTTCTAAAGGTCGCGGCTCAAGTTC
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