FC925008

Overview
NameFC925008
Unique NameFC925008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCBP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gnd PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.746e-33
Identity = 68/160 (42.50%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 633
            +IG+ G+AVMG+NLALN+    + +S++NR+    ++ +     +   P F  +D   FV S+  PR I++++K+G   D+TIK+L  Y+ KGD IIDGGN +Y++T +R   + ++G+  +G G SGGE+GA +GPS+MPGG  EAY Y+  IL K+A+
Sbjct:    5 QIGVIGMAVMGRNLALNMERNQYTVSIFNRSLDITEKIILNNPNKNLFPFFSIKD---FVLSLIVPRCIVLMIKSGVATDDTIKSLIPYLSKGDIIIDGGNTFYKDTIQRGYELLKIGVNLIGAGFSGGEKGALYGPSIMPGGRQEAYNYVSPILKKIAS 161          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPL (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Klebsiella planticola GN=gnd PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.281e-33
Identity = 70/154 (45.45%), Postives = 105/154 (68.18%), Query Frame = 1
Query:  175 AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            AVMG+NLALNI  +G+ +SV+NR+  K +E +     +  +P +  ++   FV S++ PR I+++VKAGA  D  I +L  Y+ KGD IIDGGN ++++T RR + ++  G  ++G GVSGGEEGA  GPS+MPGG  EAY+ +  IL ++AA+
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPHYTVKE---FVESLETPRRILLMVKAGAGTDSAIDSLKPYLNKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEQIAAR 151          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_TRYBB (6-phosphogluconate dehydrogenase, decarboxylating OS=Trypanosoma brucei brucei GN=GND PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.635e-33
Identity = 74/164 (45.12%), Postives = 103/164 (62.80%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            +G+ GL VMG NLALNIAEKGF ++V+NRT SK +E +   K     P  G    F   E+F  S++KPR  ++LV+AGA  D T + L    EKGD ++D GN  +++  RR + +   GL +LGMG+SGGEEGAR GP+  PGG+   ++ I  I+   AA+
Sbjct:    5 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFM---KANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTTEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAK 165          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_TREPA (6-phosphogluconate dehydrogenase, decarboxylating OS=Treponema pallidum GN=gnd PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.666e-33
Identity = 73/160 (45.62%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            IG  GLAVMG+NL LNI   GF ++V+NRTT+ VD  +  A +     + G       V+ + +PR I+++VKAG+ VD  I  +   +EKGD +IDGGN  Y++T RR  A+   G+ ++G GVSGGEEGA  GPSLMPGGS +A+  +  I   +AA+
Sbjct:    5 IGFIGLAVMGENLVLNIERNGFSVAVFNRTTTVVDRFL--AGRAHGKRITGAHSIAELVSLLARPRKIMLMVKAGSAVDAVIDQILPLLEKGDLVIDGGNSHYQDTIRRMHALEAAGIHFIGTGVSGGEEGALRGPSLMPGGSAQAWPLVSPIFCAIAAK 162          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: YQEC_BACSU (Uncharacterized protein yqeC OS=Bacillus subtilis GN=yqeC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.302e-19
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            +IGL GL  MG N+     ++   +  Y+   + VDE ++    EG   L      + F++ +  PR++ ++V  G  VD  ++ +S  + KGD II+ GN  Y+ + RR   M E G+ YL  G SGG EGARHG   M GG  EA++ +E +    A +
Sbjct:    2 KIGLIGLGKMGINIGKQFIDRNHQVVGYDVNQAAVDE-LKAYGAEGTTNL------KEFISLLHPPRILWVMVPHGI-VDAVLRDVSPLLSKGDMIIEAGNSHYKESIRRYNQMKEAGIHYLDAGTSGGMEGARHGACFMVGGDHEAWEIVEPLFRDTAVE 154          
The following BLAST results are available for this feature:
BLAST of FC925008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_BUCBP1.746e-3342.506-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPL2.281e-3345.456-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_TRYBB6.635e-3345.126-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_TREPA8.666e-3345.636-phosphogluconate dehydrogenase, decarboxylating ... [more]
YQEC_BACSU9.302e-1934.16Uncharacterized protein yqeC OS=Bacillus subtilis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YO06FM1 TF Citrus clementina cDNA clone KN0AAP1YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925008 ID=FC925008; Name=FC925008; organism=Citrus clementina; type=EST; length=640bp
TTATGTTTATAGAGTCTCTGCTCTGCTAATCCCAGATCACATTTTGGGTT
GATTTGTCTGAATTTTCATTCTCTTGTTTTTGCATCAGATTTTAGAAGAA
GAAGAAGAAGAATTTTTTAAGAGGAAGATATGGTTGAGGGCAAACAACTT
ACGAGAATAGGCCTTGCTGGTCTGGCGGTCATGGGCCAAAATCTCGCCCT
CAACATTGCTGAAAAAGGCTTTCCCATTTCTGTTTATAACCGAACTACCT
CCAAAGTTGATGAGACAGTTGAAAGAGCTAAAAAGGAGGGAGATTTGCCT
TTATTTGGTTTCCGTGATCCTGAATCATTTGTCAATTCAATCCAAAAACC
TCGGGTGATAATCATGCTTGTTAAAGCTGGTGCACCTGTTGACGAAACCA
TTAAGACCCTCTCTGCTTACATGGAGAAAGGTGATTGCATCATTGATGGG
GGTAATGAGTGGTATGAGAACACCGAGAGAAGAGAGAAAGCCATGGCTGA
ATTGGGTTTGCTCTACCTTGGAATGGGAGTTTCAGGTGGTGAAGAGGGTG
CAAGACATGGTCCTTCTTTGATGCCTGGAGGATCATTCGAGGCTTACAAG
TATATTGAAGACATTCTTCTAAAGGTCGCGGCTCAAGTTC
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