FC925020

Overview
NameFC925020
Unique NameFC925020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.245e-75
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EIT++ FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.245e-75
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPT VPGGDLAKV RAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEK
Sbjct:  282 YHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.932e-75
Identity = 127/149 (85.23%), Postives = 141/149 (94.63%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV +ITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVN+A+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  276 YHEQLSVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 424
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 5.002e-75
Identity = 129/149 (86.58%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+ HKFDLMYAK AFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.002e-75
Identity = 128/149 (85.91%), Postives = 139/149 (93.29%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPG DLAKV RAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEK
Sbjct:  282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.532e-75
Identity = 129/149 (86.58%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSVPEITNA FE S+ M KCDPR GKYMACCL+YRGDVVPKDVNAA+A IKT+R++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  157 YHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 305
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.532e-75
Identity = 127/149 (85.23%), Postives = 141/149 (94.63%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQL+V EITNA FEP++ M KCDPR GKYMACC++YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEK
Sbjct:  282 YHEQLTVAEITNACFEPANQMVKCDPRRGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.114e-74
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVV GGDLAKVQR VCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  282 YHEQLSVAEITNSCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVAGGDLAKVQRIVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDIAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.901e-74
Identity = 127/149 (85.23%), Postives = 141/149 (94.63%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQL+V E+T+A FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVV GGDLAKVQRAVCM+SN TAVAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:   71 YHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 219
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.232e-73
Identity = 127/149 (85.23%), Postives = 138/149 (92.62%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITN  FEP + M KCDPRHGKYMA CL++RGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITNMCFEPHNQMVKCDPRHGKYMAVCLLFRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of FC925020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA8_BOVIN2.245e-7585.91Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA3_HOMAM2.245e-7585.91Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA_ONCKE2.932e-7585.23Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA3E_HUMAN5.002e-7586.58Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA1_HOMAM5.002e-7585.91Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA3_CHICK6.532e-7586.58Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_DROME6.532e-7585.23Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]
TBA5_CHICK1.114e-7485.23Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA_OCTVU1.901e-7485.23Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBA_HAECO1.232e-7385.23Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YO13FM1 TF Citrus clementina cDNA clone KN0AAP1YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925020 ID=FC925020; Name=FC925020; organism=Citrus clementina; type=EST; length=716bp
CATACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAG
CCCTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGC
TTGCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCG
CTGTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGC
CCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACC
TGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACA
ACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTC
ATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGA
GGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAG
ATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAA
GAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAGAAATATGT
ACATTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTC
TGTACTCAATGCTTAATCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTG
TAGACTATTTTCCTTTTGCTGTTGAACTCTCAAAATTGTGCCAATATTGT
GAATCTTGGTGCTTTT
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