FC925020

Overview
NameFC925020
Unique NameFC925020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1812 contig Ccv1_Contig1812:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.041e-80
Identity = 140/149 (93.96%), Postives = 145/149 (97.32%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVP GDLAKV RAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  281 YHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 429
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.041e-80
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNA+VATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+TA+ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.775e-80
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQL+V EITN+VFEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNA+VA IKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCM+SN TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLTVAEITNSVFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVAVIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.775e-80
Identity = 139/149 (93.29%), Postives = 144/149 (96.64%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQ SVPEIT +VFEPS+MMAKCDPRHGKYMACCLMYRGDVVPKDVN AVA IK KRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.027e-80
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQ SVPEITN+VFE SS+MAKCDPRHGKYMACCLMYRGDVVPKDVNAAV +IKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRID KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQHSVPEITNSVFESSSVMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVHSIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.808e-80
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITN+ FEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.808e-80
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITN+ FEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.808e-80
Identity = 139/149 (93.29%), Postives = 145/149 (97.32%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITN+ FEP+SMMAKCDPRHGKYMACC+MYRGDVVPKDVNAAVATIKTKRT+QFVDW PTGFKCGINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.150e-79
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EI+NAVFEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDW PTGFKCGINYQPPTVVPGGDLAKVQRAVCMI+N+TA+AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.150e-79
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EI+NAVFEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDW PTGFKCGINYQPPTVVPGGDLAKVQRAVCMI+N+TA+AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of FC925020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA2_STYLE1.041e-8093.96Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA1_CHLRE1.041e-8092.62Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBAD_PHYPO1.775e-8092.62Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA1_ARATH1.775e-8093.29Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_ELEIN3.027e-8095.30Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA_PLAYO8.808e-8092.62Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK8.808e-8092.62Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_EUPOC8.808e-8093.29Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA_TRYCR1.150e-7992.62Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA_TRYBR1.150e-7992.62Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YO13FM1 TF Citrus clementina cDNA clone KN0AAP1YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925020 ID=FC925020; Name=FC925020; organism=Citrus clementina; type=EST; length=716bp
CATACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAG
CCCTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGC
TTGCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCG
CTGTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGC
CCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACC
TGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACA
ACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTC
ATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGA
GGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAG
ATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAA
GAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAGAAATATGT
ACATTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTC
TGTACTCAATGCTTAATCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTG
TAGACTATTTTCCTTTTGCTGTTGAACTCTCAAAATTGTGCCAATATTGT
GAATCTTGGTGCTTTT
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