FC925020

Overview
NameFC925020
Unique NameFC925020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 3
Query:    6 HEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434
            +  L+V E+T  +F+  +M A  DPRHG+Y+    +++G +  ++V+  +  I+ K +  F DW P   K  I   PP          ++ +   I NN A+ E+F+ +  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  209 YRALTVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPPR--------GLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 343          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 49/143 (34.27%), Postives = 80/143 (55.94%), Query Frame = 3
Query:    6 HEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434
            +  L+V E+T  +F+  +MMA  DPRHG Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +V    NNTAV E+  R+  +F   + ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  281 YRALTVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNM 414          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 45/143 (31.47%), Postives = 79/143 (55.24%), Query Frame = 3
Query:    6 HEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434
            +  L+VPE+T  +++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I N++++ E+F R       M+ ++AF+HWY  EGM+E EF+E   ++
Sbjct:   77 YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNM 211          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 46/141 (32.62%), Postives = 80/141 (56.74%), Query Frame = 3
Query:    9 EQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 431
            ++LSV E+T+++F+  +++   DPR G+Y+    ++RG V   +   +V  ++ K +  FV+W P      +   PP   P        +A   ++N+T + E+F R   +F LM+ +RAF+HWY GEGM+  EF+EA  +
Sbjct:  286 QRLSVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESN 418          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = 3
Query:   18 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 443
            +V E+   +F  ++++   D R GK +    ++RG + P++V+  +  ++ K    FVDW P   K  I   PP          ++ +   I N TA+  +F R+      M  ++A +HWY GEGMEE EF +A+++L A+
Sbjct:  284 TVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPPR--------GLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAI 417          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   45 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 443
            F     + + DP+H  Y+AC LM RG+V   D+   +  +K   ++QFV W   G+K  +   PP             ++  ++NNT V   F  +  +F  +Y K+A +H Y+  EGMEE  F+EA   L+AL
Sbjct:  327 FSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSAL 450          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 3
Query:   45 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 443
            F     + + DPRH  Y+AC L+ RG+V   D+   +  +K    +QFV W   G+K  +   PP             ++  ++NNT V   F  +  +F  +Y K+A +H Y+  +GMEE  F+EA   L+AL
Sbjct:  327 FSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSAL 450          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 40/152 (26.32%), Postives = 80/152 (52.63%), Query Frame = 3
Query:    9 EQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAAL 443
            ++ SV ++   + +P ++M  C  + G Y++   + RGDV P D++ ++  I+ K+ V F+ W P   +  ++ Q P        A V   V  CM++N++ +  +F+RI   +D++  + AF++ Y       E ++  EF +A+E +  L
Sbjct:  285 QKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNL 427          
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  186 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434
            FV+W P   K  +   PP          ++ +   I N+TA+ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:    3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 77          
The following BLAST results are available for this feature:
BLAST of FC925020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
YI016_HUMAN7.094e-2132.87Putative tubulin beta chain-like protein ENSP00000... [more]
TBB4Q_HUMAN3.520e-2034.27Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB3_ANEPH3.520e-2031.47Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBB2_SUIBO1.747e-1932.62Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBBP_DROME3.084e-1630.28Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBE_HUMAN3.192e-1332.84Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE5.444e-1332.09Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_RETFI1.027e-1126.32Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBB_LYMST5.095e-1137.35Tubulin beta chain (Fragment) OS=Lymnaea stagnalis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YO13FM1 TF Citrus clementina cDNA clone KN0AAP1YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925020 ID=FC925020; Name=FC925020; organism=Citrus clementina; type=EST; length=716bp
CATACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAG
CCCTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGC
TTGCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCG
CTGTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGC
CCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACC
TGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACA
ACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTC
ATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGA
GGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAG
ATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAA
GAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAGAAATATGT
ACATTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTC
TGTACTCAATGCTTAATCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTG
TAGACTATTTTCCTTTTGCTGTTGAACTCTCAAAATTGTGCCAATATTGT
GAATCTTGGTGCTTTT
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