FC925020
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21 Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 3 Query: 6 HEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434 + L+V E+T +F+ +M A DPRHG+Y+ +++G + ++V+ + I+ K + F DW P K I PP ++ + I NN A+ E+F+ + +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 209 YRALTVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPPR--------GLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 343
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20 Identity = 49/143 (34.27%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 6 HEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434 + L+V E+T +F+ +MMA DPRHG Y+ ++RG + ++V+ + I+ K + F DW P K + PP ++ +V NNTAV E+ R+ +F + ++AF+HWY GEGM+E EF+EA ++ Sbjct: 281 YRALTVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNM 414
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20 Identity = 45/143 (31.47%), Postives = 79/143 (55.24%), Query Frame = 3 Query: 6 HEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434 + L+VPE+T +++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ A I N++++ E+F R M+ ++AF+HWY EGM+E EF+E ++ Sbjct: 77 YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNM 211
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19 Identity = 46/141 (32.62%), Postives = 80/141 (56.74%), Query Frame = 3 Query: 9 EQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 431 ++LSV E+T+++F+ +++ DPR G+Y+ ++RG V + +V ++ K + FV+W P + PP P +A ++N+T + E+F R +F LM+ +RAF+HWY GEGM+ EF+EA + Sbjct: 286 QRLSVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESN 418
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16 Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = 3 Query: 18 SVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 443 +V E+ +F ++++ D R GK + ++RG + P++V+ + ++ K FVDW P K I PP ++ + I N TA+ +F R+ M ++A +HWY GEGMEE EF +A+++L A+ Sbjct: 284 TVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPPR--------GLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAI 417
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 3 Query: 45 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 443 F + + DP+H Y+AC LM RG+V D+ + +K ++QFV W G+K + PP ++ ++NNT V F + +F +Y K+A +H Y+ EGMEE F+EA L+AL Sbjct: 327 FSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSAL 450
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13 Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 3 Query: 45 FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAAL 443 F + + DPRH Y+AC L+ RG+V D+ + +K +QFV W G+K + PP ++ ++NNT V F + +F +Y K+A +H Y+ +GMEE F+EA L+AL Sbjct: 327 FSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSAL 450
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 40/152 (26.32%), Postives = 80/152 (52.63%), Query Frame = 3 Query: 9 EQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAAL 443 ++ SV ++ + +P ++M C + G Y++ + RGDV P D++ ++ I+ K+ V F+ W P + ++ Q P A V V CM++N++ + +F+RI +D++ + AF++ Y E ++ EF +A+E + L Sbjct: 285 QKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNL 427
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 3 Query: 186 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 434 FV+W P K + PP ++ + I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ Sbjct: 3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 77 The following BLAST results are available for this feature:
BLAST of FC925020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925020 ID=FC925020; Name=FC925020; organism=Citrus clementina; type=EST; length=716bpback to top |