FC925020

Overview
NameFC925020
Unique NameFC925020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 5.908e-76
Identity = 129/149 (86.58%), Postives = 141/149 (94.63%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 7.717e-76
Identity = 128/149 (85.91%), Postives = 142/149 (95.30%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQL+V +ITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  282 YHEQLTVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.717e-76
Identity = 130/149 (87.25%), Postives = 141/149 (94.63%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP++ M K DPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.316e-75
Identity = 128/149 (85.91%), Postives = 142/149 (95.30%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQL+V E+T+A FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TAVAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.719e-75
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPT VPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.719e-75
Identity = 129/149 (86.58%), Postives = 141/149 (94.63%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKF LMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFVLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.245e-75
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQL+V EITN  FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLTVSEITNTCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.245e-75
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EIT++ FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.245e-75
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EIT++ FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of FC925020 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.245e-75
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:    3 YHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 449
            YHEQLSV EIT++ FEP+S M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  282 YHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of FC925020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA4A_BOVIN5.908e-7686.58Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA_XENLA7.717e-7685.91Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA3_DROME7.717e-7687.25Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]
TBA_ENTDO1.316e-7585.91Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA_NOTVI1.719e-7585.91Tubulin alpha chain OS=Notophthalmus viridescens P... [more]
TBA1B_PANTR1.719e-7586.58Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1... [more]
TBA_LEPDS2.245e-7585.91Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA8_RAT2.245e-7585.91Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE2.245e-7585.91Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN2.245e-7585.91Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YO13FM1 TF Citrus clementina cDNA clone KN0AAP1YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925020 ID=FC925020; Name=FC925020; organism=Citrus clementina; type=EST; length=716bp
CATACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAG
CCCTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGC
TTGCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCG
CTGTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGC
CCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACC
TGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACA
ACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTC
ATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGA
GGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAG
ATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAA
GAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAGAAATATGT
ACATTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTC
TGTACTCAATGCTTAATCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTG
TAGACTATTTTCCTTTTGCTGTTGAACTCTCAAAATTGTGCCAATATTGT
GAATCTTGGTGCTTTT
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