FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925037_ssr17 microsatellite FC925037_ssr17:17..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:13..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_DROME (V-type proton ATPase subunit B OS=Drosophila melanogaster GN=Vha55 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.155e-72
Identity = 140/190 (73.68%), Postives = 156/190 (82.11%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y+TV+GV GPLVILD+VK PK+ EIV +RL DGT+R GQVLEV G KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK   K+   + D   DNFAIV
Sbjct:   24 LTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTVRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKS---VLDDHTDNFAIV 210          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_MANSE (V-type proton ATPase subunit B OS=Manduca sexta GN=VHA55 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.426e-72
Identity = 140/190 (73.68%), Postives = 156/190 (82.11%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y+TV+GV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK   K+   + D  EDNFAIV
Sbjct:   28 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTHRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKIPGKS---VLDDHEDNFAIV 214          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_DICDI (V-type proton ATPase subunit B OS=Dictyostelium discoideum GN=vatB PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.517e-71
Identity = 134/190 (70.53%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            ++YRTVT V GPLVILD ++GPK+ EIV + LGDGT R+GQVLE+ G++AVVQVFEGT GID K T  +F+G++LK PVS D LGRIFNGSGKP+D GP +L E YLDI G  INPS R YP+EMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK   K+   + D  EDNFAIV
Sbjct:   21 LDYRTVTAVNGPLVILDNIRGPKFSEIVTLTLGDGTQRKGQVLEIQGKRAVVQVFEGTIGIDAKHTRCEFSGDILKMPVSEDSLGRIFNGSGKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK---KSGKGVIDDHEDNFAIV 207          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 1.746e-70
Identity = 136/206 (66.02%), Postives = 165/206 (80.10%), Query Frame = 3
Query:  120 AQNNVDMEEG-TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            A N   +E+G  ++  + Y TV+GV GPLVIL+KVK P+Y EIVN+ L DGT+R+GQVLE+ G++A+VQVFEGTSGID K TTV+FTGE L+ PVS DMLGRIF+GSG+PIDNGP +  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLV+  +     + DG E+NF+IV
Sbjct:   10 AINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRPTKD----VHDGHEENFSIV 211          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_RAT (V-type proton ATPase subunit B, brain isoform OS=Rattus norvegicus GN=Atp6v1b2 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.300e-69
Identity = 135/190 (71.05%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+ +     + D  E+NFAIV
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKD----VVDYSEENFAIV 230          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_PONAB (V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.300e-69
Identity = 135/190 (71.05%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+ +     + D  E+NFAIV
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKD----VVDYSEENFAIV 230          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_MOUSE (V-type proton ATPase subunit B, brain isoform OS=Mus musculus GN=Atp6v1b2 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.300e-69
Identity = 135/190 (71.05%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+ +     + D  E+NFAIV
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKD----VVDYSEENFAIV 230          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_HUMAN (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 4.300e-69
Identity = 135/190 (71.05%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+ +     + D  E+NFAIV
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKD----VVDYSEENFAIV 230          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_BOVIN (V-type proton ATPase subunit B, brain isoform OS=Bos taurus GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 4.300e-69
Identity = 135/190 (71.05%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+ +     + D  E+NFAIV
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKD----VVDYSEENFAIV 230          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 7.334e-69
Identity = 130/199 (65.33%), Postives = 158/199 (79.40%), Query Frame = 3
Query:  138 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            +++ +++  + Y TV  + GPLVILD ++ P+Y EIVN+ L DG++R GQVLEV G KA+VQVFEGTSG+D + TT+ FTG  ++ PVS DMLGR+FNGSG PID GP +L E YLDI+GS INP  R YPEEMIQTGIS+ID +NSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVKR  K    + DG EDNF+IV
Sbjct:   13 VKDYSIKPRLSYNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPTKD---VHDGHEDNFSIV 208          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_DROME4.155e-7273.68V-type proton ATPase subunit B OS=Drosophila melan... [more]
VATB_MANSE5.426e-7273.68V-type proton ATPase subunit B OS=Manduca sexta GN... [more]
VATB_DICDI3.517e-7170.53V-type proton ATPase subunit B OS=Dictyostelium di... [more]
VATB_YEAST1.746e-7066.02V-type proton ATPase subunit B OS=Saccharomyces ce... [more]
VATB2_RAT4.300e-6971.05V-type proton ATPase subunit B, brain isoform OS=R... [more]
VATB2_PONAB4.300e-6971.05V-type proton ATPase subunit B, brain isoform OS=P... [more]
VATB2_MOUSE4.300e-6971.05V-type proton ATPase subunit B, brain isoform OS=M... [more]
VATB2_HUMAN4.300e-6971.05V-type proton ATPase subunit B, brain isoform OS=H... [more]
VATB2_BOVIN4.300e-6971.05V-type proton ATPase subunit B, brain isoform OS=B... [more]
VATB_SCHPO7.334e-6965.33V-type proton ATPase subunit B OS=Schizosaccharomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
back to top