FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_SULIY (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=atpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.220e-39
Identity = 84/189 (44.44%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            E+  ++ + GPL+ +  V    Y E+V I + +G  RRG V++     A+VQVFEGT+G+    T ++  G  L+  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+V
Sbjct:    6 EFSNISMIKGPLIYVQGVTDASYNELVEIEMPNGEKRRGLVIDSQMGIAIVQVFEGTTGVSPTGTKIRMLGRGLEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_SULIN (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=atpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.220e-39
Identity = 84/189 (44.44%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            E+  ++ + GPL+ +  V    Y E+V I + +G  RRG V++     A+VQVFEGT+G+    T ++  G  L+  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+V
Sbjct:    6 EFSNISMIKGPLIYVQGVTDASYNELVEIEMPNGEKRRGLVIDSQMGIAIVQVFEGTTGVSPTGTKIRMLGRGLEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_SULIM (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=atpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.220e-39
Identity = 84/189 (44.44%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            E+  ++ + GPL+ +  V    Y E+V I + +G  RRG V++     A+VQVFEGT+G+    T ++  G  L+  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+V
Sbjct:    6 EFSNISMIKGPLIYVQGVTDASYNELVEIEMPNGEKRRGLVIDSQMGIAIVQVFEGTTGVSPTGTKIRMLGRGLEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_SULIL (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=atpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.220e-39
Identity = 84/189 (44.44%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            E+  ++ + GPL+ +  V    Y E+V I + +G  RRG V++     A+VQVFEGT+G+    T ++  G  L+  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+V
Sbjct:    6 EFSNISMIKGPLIYVQGVTDASYNELVEIEMPNGEKRRGLVIDSQMGIAIVQVFEGTTGVSPTGTKIRMLGRGLEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_SULIK (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=atpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.220e-39
Identity = 84/189 (44.44%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            E+  ++ + GPL+ +  V    Y E+V I + +G  RRG V++     A+VQVFEGT+G+    T ++  G  L+  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+V
Sbjct:    6 EFSNISMIKGPLIYVQGVTDASYNELVEIEMPNGEKRRGLVIDSQMGIAIVQVFEGTTGVSPTGTKIRMLGRGLEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_SULIA (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.16.27) GN=atpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.220e-39
Identity = 84/189 (44.44%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            E+  ++ + GPL+ +  V    Y E+V I + +G  RRG V++     A+VQVFEGT+G+    T ++  G  L+  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+V
Sbjct:    6 EFSNISMIKGPLIYVQGVTDASYNELVEIEMPNGEKRRGLVIDSQMGIAIVQVFEGTTGVSPTGTKIRMLGRGLEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_CLOTE (V-type ATP synthase beta chain 2 OS=Clostridium tetani GN=atpB2 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39
Identity = 79/165 (47.88%), Postives = 115/165 (69.70%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EY  +  V GPLV+L +V+G  Y EIV I++ +G  ++G+V+++ G+KAV+QVFE T+G+  + TT+ FTG+ L+  +S ++LGR FNG G+ ID    I      +++G  INP  R YP   IQTGIS+ID + ++ RGQK+P+FS  G+PHNE+AAQI RQA
Sbjct:    4 EYLLLDRVQGPLVVLSEVEGVAYDEIVEIKIANGETKKGRVVQLQGDKAVIQVFESTTGMSLQNTTISFTGKPLEISLSREVLGREFNGIGEAIDGRGEIYSLKKYNVNGRPINPVARKYPRNFIQTGISSIDCLTTLIRGQKLPIFSGNGMPHNELAAQIIRQA 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_DEIDV (V-type ATP synthase beta chain OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=atpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39
Identity = 86/189 (45.50%), Postives = 117/189 (61.90%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY  V  ++GPL+ ++      Y  IVNI+   G  R GQV+ V  + AV+QVFE T G+D    +V    +V +  VS +M+GR F+G G+PID  P ++ E  L I+G ++NP+ R  PEE IQTGISTIDV  S+ RGQK+P+FS +GLPHNE+AAQI RQA +             G E +FA+V
Sbjct:    7 EYNDVAYISGPLLFVNAASDLAYGAIVNIKDASGRSRGGQVISVTDQNAVIQVFEETRGLDLATASVSLVEDVARLGVSKEMIGRRFDGLGRPIDGLPQVVAEQRLSINGQAMNPAARAKPEEFIQTGISTIDVQTSLIRGQKLPIFSGSGLPHNELAAQIARQAKV------------PGHEGDFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PYRAE (V-type ATP synthase beta chain OS=Pyrobaculum aerophilum GN=atpB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 86/194 (44.33%), Postives = 120/194 (61.86%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            L   + Y TV  V GPL++++K +G  Y E+  +   DG  RR QV+EV  + AV QV  GT G+  K +TV+F G+ LK PVS  ++GRI +G G+P D+ P   PE + D++G  +NP  R YPEE I+TGIS ID + ++ RGQK+P+FS  GLPHN +AAQ+ RQA +             G E+ FA+V
Sbjct:    2 LTPVVSYTTVREVKGPLIVIEKTRGVSYGEVGEVIGPDGEPRRVQVIEVGTDYAVAQVLGGTLGLPAKGSTVRFYGKTLKIPVSEQLIGRILDGKGQPRDHMPLPPPEDFRDVNGEPLNPYSREYPEEPIETGISAIDGLYTLVRGQKLPIFSGTGLPHNLMAAQVVRQATV------------RGSEEEFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_COPPD (V-type ATP synthase beta chain OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=atpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.056e-39
Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 686
            E+R+++ V GPLV ++ V    Y E+V  +L +G +R GQVLE     ++VQVFEGT G+  K TT +F G  L   VS  +LGR+F+G G+P+D  P    + Y+DI+G+ +NP  R YP E IQTGIS ID MN++ RGQK+P+FS +GLPH  +AAQI  QA ++   EK
Sbjct:    4 EFRSISEVNGPLVFVEGVSDAAYGELVEFQL-NGEIRHGQVLETTDRFSLVQVFEGTQGLTPKTTTARFLGRGLTFGVSEGILGRVFDGLGEPLDGKPQPFVDKYVDINGAPMNPVSREYPAEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHARLAAQIASQAKVLSSEEK 175          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_SULIY1.220e-3944.44V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_SULIN1.220e-3944.44V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_SULIM1.220e-3944.44V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_SULIL1.220e-3944.44V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_SULIK1.220e-3944.44V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_SULIA1.220e-3944.44V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB2_CLOTE2.718e-3947.88V-type ATP synthase beta chain 2 OS=Clostridium te... [more]
VATB_DEIDV3.550e-3945.50V-type ATP synthase beta chain OS=Deinococcus dese... [more]
VATB_PYRAE4.637e-3944.33V-type ATP synthase beta chain OS=Pyrobaculum aero... [more]
VATB_COPPD6.056e-3947.98V-type ATP synthase beta chain OS=Coprothermobacte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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