FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_HALOH (V-type ATP synthase beta chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 80/167 (47.90%), Postives = 112/167 (67.07%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL 668
            EYR V  + GPLV++D V    + E+V +   D   RRG+VL+V   +AV+QVFEGTSG+  + T V+F    ++  +S D+LGR+FNG G+PID G  +      +I+G++INP  R YP   IQTG+S ID + ++ RGQK+P+FS  GLPHN++AAQI RQA L
Sbjct:    5 EYRGVASINGPLVVVDGVTDVGFDEMVEVITPDKHKRRGRVLQVSKNRAVIQVFEGTSGLATETTRVKFLRHPMEIALSRDILGRVFNGVGEPIDGGGEVYSNKKYNINGNAINPYSRQYPRNYIQTGVSAIDGLITLIRGQKLPIFSGNGLPHNQLAAQIARQARL 171          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PYRIL (V-type ATP synthase beta chain OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.033e-38
Identity = 84/194 (43.30%), Postives = 121/194 (62.37%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            L   + Y TV  V GPL++++K +G  Y EI  +   DG  R+ QV+EV  + A+ QV  GT G+  K +TV+F G+ LK PVS +++GRI +G G+P D+ P   PE + D++G  +NP  R YPEE I+TGIS ID + ++ RGQK+P+FS  GLPHN +AAQ+ RQ+ +             G E+ FA+V
Sbjct:    2 LTPVVSYSTVREVKGPLIVIEKTRGVSYGEIGEVIGPDGEPRKVQVIEVGTDYAIAQVLGGTLGLPAKGSTVRFYGKTLKMPVSEELIGRILDGKGQPRDHMPLPPPEDFRDVNGEPLNPYSREYPEEPIETGISAIDGLYTLVRGQKLPIFSGTGLPHNMMAAQVVRQSTV------------RGSEEEFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PYRAR (V-type ATP synthase beta chain OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=atpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.762e-38
Identity = 85/194 (43.81%), Postives = 120/194 (61.86%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            L   + Y TV  V GPL++++K +G  Y EI  +   DG  RR QV+EV  + AV QV  GT G+  + +TV+F G+ LK PVS  ++GRI +G G+P D+ P   PE + D++G  +NP  R YPEE I+TGIS ID + ++ RGQK+P+FS  GLPHN +AAQ+ RQ+ +             G E+ FA+V
Sbjct:    2 LTPVVSYSTVREVKGPLIVIEKTRGVSYGEIGEVVGPDGEPRRVQVIEVGTDYAVAQVLGGTLGLPARGSTVRFYGKTLKIPVSEQLIGRILDGKGQPRDHMPLPPPEDFRDVNGEPLNPYSREYPEEPIETGISAIDGLYTLVRGQKLPIFSGTGLPHNLMAAQVVRQSTV------------RGSEEGFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_DEIRA (V-type ATP synthase beta chain OS=Deinococcus radiodurans GN=atpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.762e-38
Identity = 84/189 (44.44%), Postives = 117/189 (61.90%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY  V  ++GPL+ ++         IVNI+ G+G +R G+V+ V  + AV+QVFE T G+D    +V    +V +  VS +M+GR F+G G+PID  P ++ E  L + G  +NP+ R  PEE IQTGISTIDV  S+ RGQK+P+FS +GLPHNE+AAQI RQA +             G E +FA+V
Sbjct:    7 EYNDVAYISGPLLFVNAASDLPNGAIVNIKDGNGKLRGGRVISVSDQNAVIQVFEETRGLDLATASVSLVEDVARLGVSKEMIGRRFDGLGRPIDGLPAVVAEQRLSVDGQPMNPAARAKPEEFIQTGISTIDVQTSLIRGQKLPIFSGSGLPHNELAAQIARQAKV------------PGHEGDFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THENV (V-type ATP synthase beta chain OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=atpB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.301e-38
Identity = 85/194 (43.81%), Postives = 121/194 (62.37%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            L   + Y TV  V GPL+++++ +G  Y EI  +   DG  RR QV+EV  + AV QV  GT G+  K +TV+F G+ LK PVS +++GRI +G G+P D+ P   PE + D++G  +NP  R YPEE I+TGIS ID + ++ RGQK+P+FS  GLPHN +AAQ+ RQ+ +             G E+ FA+V
Sbjct:    2 LTPVVSYSTVKEVKGPLLVIERTRGVAYGEIGEVVGPDGEPRRVQVIEVGTDYAVAQVLGGTLGLPAKGSTVRFYGKTLKLPVSEELIGRILDGKGQPRDHMPLPPPEDFRDVNGEPLNPYSREYPEEPIETGISAIDGLYTLVRGQKLPIFSGTGLPHNLMAAQVVRQSTV------------RGSEEGFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THENN (V-type ATP synthase beta chain OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=atpB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.925e-38
Identity = 78/165 (47.27%), Postives = 113/165 (68.48%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EY  ++ + GP+V+++ V G +Y E+V + L +G  R G+V+      A++QVFEGT  +D + T V+F G+ L+  +S D+LGR  +G GKP DN   I+PE  +DI+GS INPS R YP   IQTGIS+IDV+ ++ RGQK+P+F+  GLP+N +A QI RQA
Sbjct:    5 EYTGLSEIRGPIVVVENVSGVRYDEVVELILENGEKRTGRVIIAGENVAIIQVFEGTEEMDIEGTRVRFLGKPLEVSLSPDLLGRTLDGLGKPRDNLGEIVPEKTVDINGSPINPSAREYPRNFIQTGISSIDVLMTLIRGQKLPIFAGNGLPYNRLAVQIARQA 169          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_NITOC (V-type ATP synthase beta chain OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=atpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 83/189 (43.92%), Postives = 117/189 (61.90%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EYRT +   G L+ +  + G  + E V ++   G  R GQV+   GE  +VQVFEGT  +D + T V+F  E  + P+S D+LGRIF+G G P D+ PP++     +++G+ +NP  R YP+E IQTGI+ ID +NS+ RGQK+P+FS +GLPHN +AAQI RQA L+            GEE  F +V
Sbjct:    5 EYRTASAARGGLLFMRDIPGGAFGERVIVKDHRGRRRNGQVIFTSGEVVLVQVFEGTDDLDLERTWVRFLEEPFEIPLSPDVLGRIFDGVGAPRDDRPPMIAPLKRNVNGAPVNPVARAYPQEFIQTGIAAIDGLNSLVRGQKLPIFSGSGLPHNRLAAQIVRQAKLL------------GEETRFVMV 181          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PYRCJ (V-type ATP synthase beta chain OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=atpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.744e-38
Identity = 79/170 (46.47%), Postives = 113/170 (66.47%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            L   + Y TV  V GPL+++++ +G  Y EI  +   DG  R+ QV+EV  + AV QV  GT G+ +K +TV+F G+ LK PVS  ++GRI +G G+P D+ P   PE + D++G  +NP  R YPEE I+TGIS ID + ++ RGQK+P+FS  GLPHN +AAQ+ RQ+
Sbjct:    2 LTPVVSYSTVREVKGPLLVIERTRGVSYGEIGEVVGPDGEPRKVQVIEVATDYAVAQVLGGTLGLPSKGSTVRFYGKTLKIPVSEQLIGRILDGKGQPRDHMPLPPPEDFRDVNGEPLNPYSREYPEEPIETGISAIDGLYTLVRGQKLPIFSGTGLPHNMMAAQVVRQS 171          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THEPD (V-type ATP synthase beta chain OS=Thermofilum pendens (strain Hrk 5) GN=atpB PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34
Identity = 82/188 (43.62%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            YR V  + G L+I+D ++   Y E+V I   D   R G+VLE    +AVVQV     G++   T ++FTG   K  VS D++GR+FNG  +PID  PPIL     +I+G  INP  R YP + IQTG+S ID + S+ RGQK+P+FS +GLPHN +AAQ+ RQA +             GE + FA+V
Sbjct:    7 YRGVKEIRGSLLIVDGIEEAAYDEVVKIYGKDSRERFGRVLETSIGQAVVQVLGDREGLETD-TLLKFTGSTFKIRVSEDVIGRVFNGRFEPIDGLPPILSGELREITGEPINPISREYPHDFIQTGVSAIDGLFSMVRGQKLPIFSVSGLPHNLLAAQVARQATV------------RGEGEQFAVV 181          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_GEOUR (V-type ATP synthase beta chain OS=Geobacter uraniireducens (strain Rf4) GN=atpB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.307e-33
Identity = 72/166 (43.37%), Postives = 106/166 (63.86%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL 668
            YRT++ + GPL+ +++V   +  EIV I   DG    G+VL+++GE  ++QVF  T G+      V FT  V   P+S DM+GR+F+GS  PID  P  +PE +   +G  INP+ R  PEE I+TGI+ ID +N++ +GQK+P+FS AGLP  E+AA + + A L
Sbjct:    8 YRTISSIRGPLLFVERVFNARAGEIVRIVHPDGETVDGEVLKIEGETVLIQVFGETRGLGMD-APVAFTDGVKMAPLSPDMIGRVFDGSFHPIDGSPLFVPERWTPATGQPINPTARARPEEFIETGITAIDALNTLVKGQKLPVFSCAGLPSREVAAAVLQNARL 172          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_HALOH7.909e-3947.90V-type ATP synthase beta chain OS=Halothermothrix ... [more]
VATB_PYRIL1.033e-3843.30V-type ATP synthase beta chain OS=Pyrobaculum isla... [more]
VATB_PYRAR1.762e-3843.81V-type ATP synthase beta chain OS=Pyrobaculum arse... [more]
VATB_DEIRA1.762e-3844.44V-type ATP synthase beta chain OS=Deinococcus radi... [more]
VATB_THENV2.301e-3843.81V-type ATP synthase beta chain OS=Thermoproteus ne... [more]
VATB_THENN3.925e-3847.27V-type ATP synthase beta chain OS=Thermotoga neapo... [more]
VATB_NITOC6.695e-3843.92V-type ATP synthase beta chain OS=Nitrosococcus oc... [more]
VATB_PYRCJ8.744e-3846.47V-type ATP synthase beta chain OS=Pyrobaculum cali... [more]
VATB_THEPD4.491e-3443.62V-type ATP synthase beta chain OS=Thermofilum pend... [more]
VATB_GEOUR1.307e-3343.37V-type ATP synthase beta chain OS=Geobacter uranii... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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