FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_ANADF (V-type ATP synthase beta chain OS=Anaeromyxobacter sp. (strain Fw109-5) GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.170e-32
Identity = 72/168 (42.86%), Postives = 100/168 (59.52%), Query Frame = 3
Query:  159 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            V    R    +AGPL+ L+ V   +  E+V IR+  G  RRGQ++E+ G +  VQV E T G+      V  TGEV    VS  MLGR+ +G G+P D  P  + EA L I G+++N + R  P + I+TG+S ID +N++ RGQK+P+FS AGLP   +A QI  QA
Sbjct:    4 VTRRVRGADAIAGPLLFLEGVPRARLGELVRIRMAGGEERRGQIIELSGARVAVQVLEETRGLAPARAEVTLTGEVATLAVSRGMLGRVLDGLGRPTDGLPAPIAEARLPIHGAALNVTRREKPADFIETGVSAIDGLNTLVRGQKLPVFSCAGLPAGRLAGQIVCQA 171          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_TREPA (V-type ATP synthase beta chain 2 OS=Treponema pallidum GN=atpB2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLV 671
            YR ++ + GP+V+  + +G  Y EI  IR   G +R G+++++  E  ++QVF  T G+      ++F    ++  V   ++GR+F+G G+PID  P +L     +++G  INP  R YP + IQTGIS ID MN++ RGQK+P+FS  GL HN +AAQI RQA ++
Sbjct:    6 YRGLSSIDGPIVVAKRREGAFYGEITAIRDRFGALRTGRIIDLSQECCLIQVFGSTLGLSLDGACLEFLDVPMQLRVCEGLMGRVFDGLGRPIDGFPEVLSSQLRNVNGYPINPYARVYPRDFIQTGISAIDGMNTLIRGQKLPIFSGNGLAHNRLAAQIIRQAKIL 172          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METTL (V-type ATP synthase beta chain (Fragment) OS=Methanococcus thermolithotrophicus GN=atpB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.647e-31
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 3
Query:  360 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            T V+FTGE  K  VSL+MLGRIFNG+GKPID GP I+PE  LDI+G  +NP  R  P   +QTGISTID  N++ RGQK+P+FS +GLPHN +AAQI RQA +             GE + FA+V
Sbjct:    5 TKVRFTGETAKIGVSLEMLGRIFNGAGKPIDGGPEIIPEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKLPIFSGSGLPHNTLAAQIARQAKV------------RGEGEQFAVV 117          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_ANASK (V-type ATP synthase beta chain OS=Anaeromyxobacter sp. (strain K) GN=atpB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.350e-29
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  159 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-------GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            V    R   G+AGPL+ L+ V   +  E+V IR G+          R GQV+ +  ++  VQV E T G+      V  TG+V +  VS  MLGR+ +G G+P D  PP +PEA   I G+++N + R  P + I+TG+S ID MN++ RGQK+P+FS AGLP + +AAQI  QA
Sbjct:    4 VTRRIRGALGIAGPLLFLEGVPRARLGEVVRIR-GEPEAHGRAAEERSGQVIALSRDRIAVQVLEETRGLAPARAEVTLTGQVARLGVSRGMLGRVLDGLGRPADGLPPPVPEARPAIHGAALNVTRREKPSDFIETGVSAIDGMNTLVRGQKLPVFSCAGLPASRLAAQIVCQA 177          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_ANAD2 (V-type ATP synthase beta chain OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=atpB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.350e-29
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  159 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-------GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            V    R   G+AGPL+ L+ V   +  E+V IR G+          R GQV+ +  ++  VQV E T G+      V  TG+V +  VS  MLGR+ +G G+P D  PP +PEA   I G+++N + R  P + I+TG+S ID MN++ RGQK+P+FS AGLP + +AAQI  QA
Sbjct:    4 VTRRIRGALGIAGPLLFLEGVPRARLGEVVRIR-GEPEANGRAAEERSGQVIALSRDRIAVQVLEETRGLAPARAEVTLTGQVARLGVSRGMLGRVLDGLGRPADGLPPPVPEARPAIHGAALNVTRREKPSDFIETGVSAIDGMNTLVRGQKLPVFSCAGLPASRLAAQIVCQA 177          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_ANADE (V-type ATP synthase beta chain OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29
Identity = 72/175 (41.14%), Postives = 104/175 (59.43%), Query Frame = 3
Query:  159 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-------GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            V    R   G+AGPL+ L+ V   +  E+V IR G+          R GQV+ +  ++  VQV E T G+    + V  TG+V +  V+  MLGR+ +G G+P D  PP +PEA   I G+++N + R  P + I+TG+S ID MN++ RGQK+P+FS AGLP + +AAQI  QA
Sbjct:    4 VTRRIRGALGIAGPLLFLEGVPRARLGEVVRIR-GEPEASGRAAEERSGQVIALSRDRIAVQVLEETRGLAPARSEVTLTGQVARLGVARGMLGRVLDGLGRPADGLPPPVPEARPAIHGAALNVTRREKPSDFIETGVSAIDGMNTLVRGQKLPVFSCAGLPASRLAAQIVCQA 177          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_BORAP (V-type ATP synthase beta chain OS=Borrelia afzelii (strain PKo) GN=atpB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.811e-25
Identity = 61/164 (37.20%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT G+      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+  +I  QA
Sbjct:    5 YSKIESIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGVSTS-DEIKFLGHTMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPTKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNELLVRIALQA 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_BORBZ (V-type ATP synthase beta chain OS=Borrelia burgdorferi (strain ZS7) GN=atpB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.489e-25
Identity = 61/164 (37.20%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT G+      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+  +I  QA
Sbjct:    5 YSKIESIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGVSTS-DEIKFLGHSMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPTKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNELLIRIALQA 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_BORBU (V-type ATP synthase beta chain OS=Borrelia burgdorferi GN=atpB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.489e-25
Identity = 61/164 (37.20%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT G+      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+  +I  QA
Sbjct:    5 YSKIESIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGVSTS-DEIKFLGHSMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPTKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNELLIRIALQA 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_BORGA (V-type ATP synthase beta chain OS=Borrelia garinii GN=atpB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.448e-24
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT GI      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+  +I  QA
Sbjct:    5 YSKIECIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGISTS-DEIKFLGHSMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPAKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNELLLRIALQA 164          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_ANADF7.170e-3242.86V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB2_TREPA2.086e-3140.12V-type ATP synthase beta chain 2 OS=Treponema pall... [more]
VATB_METTL4.647e-3155.20V-type ATP synthase beta chain (Fragment) OS=Metha... [more]
VATB_ANASK4.350e-2941.71V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB_ANAD24.350e-2941.71V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB_ANADE7.420e-2941.14V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB_BORAP3.811e-2537.20V-type ATP synthase beta chain OS=Borrelia afzelii... [more]
VATB_BORBZ8.489e-2537.20V-type ATP synthase beta chain OS=Borrelia burgdor... [more]
VATB_BORBU8.489e-2537.20V-type ATP synthase beta chain OS=Borrelia burgdor... [more]
VATB_BORGA1.448e-2437.80V-type ATP synthase beta chain OS=Borrelia garinii... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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