FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_BORHD (V-type ATP synthase beta chain OS=Borrelia hermsii (strain DAH) GN=atpB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 60/164 (36.59%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  + G ++ +   +  KY E+  ++  D T    +V+++D EK  +QV+ GT GI      V+F G  ++   S ++ GRIF+G+G P D GP  L +  ++I G S+NP++R  P  MI+TGI  IDV N++   QK+P+FS +G P+NE+  +I  QA
Sbjct:    5 YSKIESIVGNVITV-MAQNVKYGELAIVKSKD-TSSLAEVIKLDREKVSLQVYNGTIGISTA-DEVKFLGHPMQVTFSENLFGRIFDGAGNPKDGGPR-LEDNLIEIGGPSVNPAKRIVPRNMIRTGIPMIDVFNTLVESQKLPVFSVSGEPYNELLVRIALQA 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_TREDE (V-type ATP synthase beta chain OS=Treponema denticola GN=atpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  + G ++ + K  G  Y E+  ++   G     +V +++G+   +QVF G  G+      V+F G+ ++   S D+LGRIFNGSG P D+GP  L +  + I G S+NPS+R     MI+TGI  IDV N++   QK+P+FS++G P+NE+ A+I  QA
Sbjct:    5 YSKIESINGSVITV-KADGVSYGELAEVQTRFGASL-AEVNKLEGDLVSLQVFAGGRGVSTG-DEVRFLGKEMQVSYSEDLLGRIFNGSGDPRDSGPA-LKDNMIPIGGPSVNPSKRILANRMIRTGIPMIDVFNTLVVSQKLPIFSSSGEPYNELLARIAMQA 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_BORT9 (V-type ATP synthase beta chain OS=Borrelia turicatae (strain 91E135) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.091e-23
Identity = 60/164 (36.59%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  + G ++ +   +  KY E+  +R  D +    +V+++D +K  +QV+ GT GI      V+F G  ++   S ++LGRIF+G+G P D GP  L +  ++I G S NP++R  P  MI+TGI  IDV N++   QK+P+FS +G P+NE+  +I  QA
Sbjct:    5 YSKIESIVGNVITV-MAQNVKYGELAIVRSKDSSSL-AEVIKLDRDKVSLQVYNGTIGISTA-DEVKFLGHPMQVTFSENLLGRIFDGAGNPKDGGPR-LEDDLIEIGGPSANPAKRIVPRNMIRTGIPMIDVFNTLVESQKLPIFSVSGEPYNELLIRIALQA 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB1_TREPA (V-type ATP synthase beta chain 1 OS=Treponema pallidum GN=atpB1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.084e-23
Identity = 62/164 (37.80%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            Y  +  + G ++ + + KG  Y E+  ++   G     +V +++G+   +QVF G  GI    + V+F G  +    S  +LGRIFNGSG P D GP  L E  ++I G S+NP++R     MI+TGI  IDV N++   QK+P+FS++G P+NE+ A+I  QA
Sbjct:    5 YEKIESINGSVITV-RAKGVHYGELARVKTAFGDSL-AEVNKLEGDVVSLQVFAGGRGISTG-SEVRFLGRGMLVSFSDYLLGRIFNGSGVPRDGGPA-LKEGRVEIGGPSVNPAKRVIARRMIRTGIPMIDVFNTLVVSQKLPIFSSSGEPYNELLARIAMQA 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLMU (V-type ATP synthase beta chain OS=Chlamydia muridarum GN=atpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D +K  +QVF GTSG+      V F G  ++      +LGR FNG+GKPIDN      E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTRITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDKVV-FLGRPMEVVYGDSLLGRRFNGTGKPIDNEEICFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PARUW (V-type ATP synthase beta chain OS=Protochlamydia amoebophila (strain UWE25) GN=atpB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +  + G L+ +   +G    E+  I L DG      VL +DG++  +QVF+ T GI      V F    ++      +LGR  +G+G PID GP ++ E+ +DI  +S NP +R  P +M++T I  IDV N + + QKIP+FS  G P+N +  +I  Q
Sbjct:    5 YDRINNMRGNLITIT-AEGVSLGELARIDLKDGRNIYASVLRIDGDQVTLQVFQTTRGISTS-DQVTFLNRQMQAVYGDTLLGRRLSGTGLPIDGGPQVIGES-IDIGSTSFNPVKRIVPRDMVRTNIPMIDVFNCLVKSQKIPIFSVPGEPYNALLMRIANQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLTB (V-type ATP synthase beta chain OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=atpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID+      E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDHEDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLT2 (V-type ATP synthase beta chain OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=atpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID+      E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDHEDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLTR (V-type ATP synthase beta chain OS=Chlamydia trachomatis GN=atpB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID       E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDREDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLTA (V-type ATP synthase beta chain OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=atpB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID       E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDREDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMRIAAQ 164          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_BORHD9.386e-2436.59V-type ATP synthase beta chain OS=Borrelia hermsii... [more]
VATB_TREDE1.601e-2337.80V-type ATP synthase beta chain OS=Treponema dentic... [more]
VATB_BORT92.091e-2336.59V-type ATP synthase beta chain OS=Borrelia turicat... [more]
VATB1_TREPA6.084e-2337.80V-type ATP synthase beta chain 1 OS=Treponema pall... [more]
VATB_CHLMU1.147e-2137.42V-type ATP synthase beta chain OS=Chlamydia murida... [more]
VATB_PARUW1.498e-2134.97V-type ATP synthase beta chain OS=Protochlamydia a... [more]
VATB_CHLTB5.694e-2136.20V-type ATP synthase beta chain OS=Chlamydia tracho... [more]
VATB_CHLT25.694e-2136.20V-type ATP synthase beta chain OS=Chlamydia tracho... [more]
VATB_CHLTR7.437e-2136.20V-type ATP synthase beta chain OS=Chlamydia tracho... [more]
VATB_CHLTA7.437e-2136.20V-type ATP synthase beta chain OS=Chlamydia tracho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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