FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLPN (V-type ATP synthase beta chain OS=Chlamydia pneumoniae GN=atpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      V F G  ++      +LGR  NG GKPIDN      E  ++I+  + NP  R  P  M++T I  IDV N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELATITRSDGRSSYASVLRFDLKKVTLQVFGGTSGLSTG-DHVTFLGRPMEVTFGSSLLGRRLNGIGKPIDNEGECFGEP-IEIATPTFNPVCRIVPRSMVRTNIPMIDVFNCLVKSQKIPIFSSSGEHHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLAB (V-type ATP synthase beta chain OS=Chlamydophila abortus GN=atpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      V F G  ++      ++GR  NG GKPID       +  ++IS  + NP  R  P +M++T I  IDV N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELAEIERVDGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDRVV-FLGRSMEVTYGESLIGRRLNGVGKPIDGEGECFGDP-IEISTPTFNPVCRVVPRDMVRTNIPMIDVFNCLVKSQKIPIFSSSGEKHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLCV (V-type ATP synthase beta chain OS=Chlamydophila caviae GN=atpB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 58/168 (34.52%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN-----GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      + F G  ++      ++GR  NG GKPID      G PI       IS  + NP  R  P +M++T I  IDV N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELAEIERVDGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDRVI-FLGRSMEVTYGESLIGRRLNGVGKPIDGEGECFGDPIA------ISTPTFNPVCRVVPRDMVKTNIPMIDVFNCLVKSQKIPIFSSSGESHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CHLFF (V-type ATP synthase beta chain OS=Chlamydophila felis (strain Fe/C-56) GN=atpB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN-----GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 659
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      + F G  ++      ++GR  +G GKPID      G PI       IS  + NP  R  P +M++T I  ID+ N + + QKIP+FS++G  HN +  +I  Q
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELAEIERVDGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDRVI-FLGRAMEVTYGESLIGRRLSGIGKPIDGEGECFGDPIA------ISTPTFNPVCRIVPRDMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMRIAAQ 164          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOCE (ATP synthase subunit beta OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=atpD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 45/161 (27.95%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 656
            +  V GP++ +    G  P  Y  + I    GT+    +  +  +         T G+       + TG+ +  PV  ++LGRIFN  G+P+D   P+ P AYL I   + +  E+    E+++TGI  +D++   A+G KI LF  AG+    +  ++ R
Sbjct:    8 IVQVIGPVLDIRFENGILPDIYNAIKIPADSGTVTAEVMQHLGNDTVRCVAMSSTDGLVRGMKA-EDTGDAITVPVGKEVLGRIFNVLGEPVDKAGPVEPTAYLPIHREAPSLEEQRPSTEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIR 167          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: FLII_BUCAI (Flagellum-specific ATP synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fliI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  285 QVLEVDGEKAVVQVFEGTSGI---DNKFTTVQFTGE--VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 656
            +V+   GEK  +  FE   GI      F+ +       + K P+ +++LGR+ +G G+P+D  P I  + Y  I   SINP  RT   E++ TGI  I+ + +I RGQKI +FS++G+  + +   I R
Sbjct:   82 EVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVLDGRGQPLDQLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQKIGIFSSSGIGKSILLGMIAR 210          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOTH (ATP synthase subunit beta OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 3
Query:  177 TVTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 656
            TV  + GP++ +  ++ K P  Y  + I   +G     +V++  G   V  V    T G+      V  TGE +K PV  ++LGR+FN  G+PID    +    YL I   +    E+    E+++TGI  ID++   A+G KI LF  AG+    +  ++ R
Sbjct:    8 TVVQIIGPVIDIRFERGKLPSIYNAIKIN-SEGIDIVAEVMQYTGNDTVRCVSMNSTDGLKRGMKAVD-TGEPIKVPVGKEVLGRVFNVLGEPIDGKGDVKATTYLPIHREAPGLDEQKPVTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELIR 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_LACRJ (ATP synthase subunit beta OS=Lactobacillus reuteri (strain JCM 1112) GN=atpD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  180 VTGVAGPLVILD---KVKGPKYYEIVNIRLGDG-TMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA-YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V ++     K P+  + + I+  DG T+     LE+          +GT G+      V+ TG  +  PV  D LGR+FN  G+P+DNGP   P+A  + I   +    +     E+++TGI  ID++    RG KI LF  AG+
Sbjct:    6 VLQVIGPVVDVEFPLDEKLPEINDALKIKESDGKTLTTEVALELGDGVVRTIAMDGTDGLQRGME-VENTGASISVPVGDDTLGRVFNVLGEPVDNGPKFGPDAKRMPIHRDAPKYDDLNNATEILETGIKVIDLLAPYVRGGKIGLFGGAGV 157          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_LACRD (ATP synthase subunit beta OS=Lactobacillus reuteri (strain DSM 20016) GN=atpD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  180 VTGVAGPLVILD---KVKGPKYYEIVNIRLGDG-TMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA-YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V ++     K P+  + + I+  DG T+     LE+          +GT G+      V+ TG  +  PV  D LGR+FN  G+P+DNGP   P+A  + I   +    +     E+++TGI  ID++    RG KI LF  AG+
Sbjct:    6 VLQVIGPVVDVEFPLDEKLPEINDALKIKESDGKTLTTEVALELGDGVVRTIAMDGTDGLQRGME-VENTGASISVPVGDDTLGRVFNVLGEPVDNGPKFGPDAKRMPIHRDAPKYDDLNNATEILETGIKVIDLLAPYVRGGKIGLFGGAGV 157          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: HRPB6_XANEU (Probable ATP synthase hrpB6 OS=Xanthomonas euvesicatoria GN=hrpB6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 3
Query:  123 QNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYY--EIVNIRLGDGTM-RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICR 656
            +  ++ E  TL V   Y  V  V G ++   KV G +    E+  +R  DGT+ +R +V+    + A++  F    G+  + T V   G  L  PV   +LGR+ +G G+P D    I  + ++ I   + +P  R   E  + TG+  +D + ++  GQ++ +F+AAG+  + +     R
Sbjct:    9 ETTLERELATLAVGRRYGKVVEVVGTML---KVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELIGLSRE-TRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQGAIACDTWVPIQAQAPDPMRRRLIEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFAR 185          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_CHLPN4.820e-2035.58V-type ATP synthase beta chain OS=Chlamydia pneumo... [more]
VATB_CHLAB1.074e-1934.36V-type ATP synthase beta chain OS=Chlamydophila ab... [more]
VATB_CHLCV3.124e-1934.52V-type ATP synthase beta chain OS=Chlamydophila ca... [more]
VATB_CHLFF2.645e-1833.33V-type ATP synthase beta chain OS=Chlamydophila fe... [more]
ATPB_CLOCE4.370e-1327.95ATP synthase subunit beta OS=Clostridium celluloly... [more]
FLII_BUCAI9.735e-1334.11Flagellum-specific ATP synthase OS=Buchnera aphidi... [more]
ATPB_CLOTH1.271e-1230.67ATP synthase subunit beta OS=Clostridium thermocel... [more]
ATPB_LACRJ1.076e-1132.68ATP synthase subunit beta OS=Lactobacillus reuteri... [more]
ATPB_LACRD1.076e-1132.68ATP synthase subunit beta OS=Lactobacillus reuteri... [more]
HRPB6_XANEU1.406e-1127.07Probable ATP synthase hrpB6 OS=Xanthomonas euvesic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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