FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CHLLI (ATP synthase subunit beta OS=Chlorobium limicola GN=atpD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 55/208 (26.44%), Postives = 99/208 (47.60%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ-----------AGLVKRLEKTDNL----LEDGEEDNFAIV 734
            M+   ++ + GP+V +D  +G  P   + + +   DG+    +  +  GE+ V ++  EGT G+    +    TG+ ++ PV  ++LGR+ N  G PID   P+L +    I  ++    E +   EM +TGI  ID++   +RG K  LF  AG+    +  ++              AG+ +R  + ++L    +E G  D  A+V
Sbjct:    1 MQEGKISQIIGPVVDVDFAEGQLPSILDALTVTRQDGSKLVLETQQHLGEERVRRIAMEGTDGLVRGMSAKN-TGKPIQVPVGEEVLGRMLNVVGDPIDGKGPVLSKKSYSIHRTAPKFDELSTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKEQSGFSVFAGVGERTREGNDLWHEMMESGVIDKTALV 207          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_THICR (ATP synthase subunit beta OS=Thiomicrospira crunogena (strain XCL-2) GN=atpD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKG---PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            +  + GP++ ++  KG   PK Y+ + +   D T+   +V +  G+  V  +  G+S    +   V  TGE +  PV    LGRIF+  G PIDN  P+  E  + I   +    E    +E+++TG+  ID++   A+G K+ LF  AG+
Sbjct:    5 IVQIIGPVIDVE-FKGADLPKIYDALKVDELDLTL---EVQQQVGDNVVRAIAMGSSDGLKRGMAVSNTGEAISVPVGKPTLGRIFDVLGNPIDNAGPVESEEKMTIHRPAPAFDELAASQELLETGVKVIDLICPFAKGGKVGLFGGAGV 151          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_PELPB (ATP synthase subunit beta OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 60/208 (28.85%), Postives = 98/208 (47.12%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHN----EIAAQICRQ-------AGLVKRLEKTDNL----LEDGEEDNFAIV 734
            M+   ++ + GP+V +D  +G  P   + + +   DGT    +  +  GE+ V  V  E T G+      V  TG+ ++ PV L++LGR+ N  G PID   P+  +    I   +    E +   EM +TGI  ID++   +RG K  LF  AG+       E+   I +Q       AG+ +R  + ++L    +E G  D  A+V
Sbjct:    1 MQEGKISQIIGPVVDVDFPEGRLPSILDALTVTRADGTKLVLETQQHLGEERVRTVAMESTDGLVRGMN-VTHTGKPIQVPVGLEVLGRMLNVVGDPIDGRGPVNTKKSYSIHRLAPRFDEISTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGFSVFAGVGERTREGNDLWHEMMESGVIDKTALV 207          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBB (ATP synthase subunit beta OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 47/150 (31.33%), Postives = 69/150 (46.00%), Query Frame = 3
Query:  180 VTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V +  D    P  Y  ++I +G+ T+       V  +       E T G+      V  T + +  PV   +LGR+FN  GKPIDN   +  E    I   + +  ++    EM +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFDSDSLPNLYNAISIDMGERTLIAEVEQHVGDDIVRTIAMEATEGLKRGMDAVD-TEKAISVPVGDQVLGRLFNVLGKPIDNAGEVEAEEIYPIHRPAPSFKDQAVEPEMFETGIKVIDLLAPYQRGGKIGLFGGAGV 156          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOAB (ATP synthase subunit beta OS=Clostridium acetobutylicum GN=atpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  180 VTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            +  V GP+V +  D    P  Y  + I +GD      +V +  G+  V  +  EGT G+      V  TG+ +  PV  ++LGR+FN  G+ ID    +  + Y  I   +    E++   EM +TGI  ID++    +G KI LF  AG+
Sbjct:    8 IVQVIGPVVDIKFDAENLPDIYNSIEIDMGDNKKLIAEVEQHVGDDIVRTIAMEGTDGLKRGMEAVN-TGKPISVPVGENVLGRLFNVLGQTIDEAGDMNADKYYPIHRPAPTFEEQSVQPEMFETGIKVIDLLAPYQKGGKIGLFGGAGV 157          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB2_CHLTE (ATP synthase subunit beta 2 OS=Chlorobium tepidum GN=atpD2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 58/208 (27.88%), Postives = 100/208 (48.08%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHN----EIAAQICRQ-------AGLVKRLEKTDNL----LEDGEEDNFAIV 734
            M+   ++ + GP+V +D  +G  P   + + +   DG+    +  +  GE+ V  +  EGT G+    + V  TG+ ++ PV  ++LGR+ N  G PID   P+  +    I  ++    E +   EM +TGI  ID++   +RG K  LF  AG+       E+   I +Q       AG+ +R  + ++L    +E G  D  A+V
Sbjct:    1 MQEGKISQIIGPVVDVDFPEGQLPSILDALTVTRQDGSKLVLETQQHLGEERVRTIAMEGTDGLVRGMSAVN-TGKPIQVPVGGEVLGRMLNVVGDPIDGKGPVPAKKTYSIHRAAPKFDELSTKTEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGYSVFAGVGERTREGNDLWHEMMESGVIDKTALV 207          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: FLII_BORBU (Flagellum-specific ATP synthase OS=Borrelia burgdorferi GN=fliI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 39/128 (30.47%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  285 QVLEVDGEKAVVQVFEGTSGID--NKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            +VL  +G    +  +EG SGI+  NK   V    + L+  +S ++LGR+ +  G+PIDN    L  +Y ++    INP  R+  E+ I TG+  +D    +A+GQ++ +FS +G+  + +   I + +
Sbjct:   58 EVLGFNGPYVSLMAYEGFSGIEVGNK---VYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNSYKELIFEKINPINRSIFEDQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNS 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOPS (ATP synthase subunit beta OS=Clostridium perfringens (strain SM101 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V +       P  +  ++I++ DG +   +V +  G+  V  +  E T G+      V  TG  +  PV   +LGRIFN  GKP+D+G  +  E    I   + +  E++   +M +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFANDELPNIFNAIHIKMDDGKILVCEVEQHVGDDIVRTIAMEATEGLRRGVEAVD-TGAPISVPVGECVLGRIFNVLGKPLDSGAEVNNEEKYPIHRPAPSFEEQSVVPQMFETGIKVIDLLAPYQRGGKIGLFGGAGV 157          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOPE (ATP synthase subunit beta OS=Clostridium perfringens GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V +       P  +  ++I++ DG +   +V +  G+  V  +  E T G+      V  TG  +  PV   +LGRIFN  GKP+D+G  +  E    I   + +  E++   +M +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFANDELPNIFNAIHIKMDDGKILVCEVEQHVGDDIVRTIAMEATEGLRRGVEAVD-TGAPISVPVGECVLGRIFNVLGKPLDSGAEVNNEEKYPIHRPAPSFEEQSVVPQMFETGIKVIDLLAPYQRGGKIGLFGGAGV 157          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOP1 (ATP synthase subunit beta OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V +       P  +  ++I++ DG +   +V +  G+  V  +  E T G+      V  TG  +  PV   +LGRIFN  GKP+D+G  +  E    I   + +  E++   +M +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFANDELPNIFNAIHIKMDDGKILVCEVEQHVGDDIVRTIAMEATEGLRRGVEAVD-TGAPISVPVGECVLGRIFNVLGKPLDSGAEVNNEEKYPIHRPAPSFEEQSVVPQMFETGIKVIDLLAPYQRGGKIGLFGGAGV 157          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ATPB_CHLLI1.836e-1126.44ATP synthase subunit beta OS=Chlorobium limicola G... [more]
ATPB_THICR2.398e-1130.46ATP synthase subunit beta OS=Thiomicrospira crunog... [more]
ATPB_PELPB2.398e-1128.85ATP synthase subunit beta OS=Pelodictyon phaeoclat... [more]
ATPB_CLOBB4.090e-1131.33ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CLOAB4.090e-1131.13ATP synthase subunit beta OS=Clostridium acetobuty... [more]
ATPB2_CHLTE4.090e-1127.88ATP synthase subunit beta 2 OS=Chlorobium tepidum ... [more]
FLII_BORBU5.342e-1130.47Flagellum-specific ATP synthase OS=Borrelia burgdo... [more]
ATPB_CLOPS5.342e-1131.79ATP synthase subunit beta OS=Clostridium perfringe... [more]
ATPB_CLOPE5.342e-1131.79ATP synthase subunit beta OS=Clostridium perfringe... [more]
ATPB_CLOP15.342e-1131.79ATP synthase subunit beta OS=Clostridium perfringe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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