FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925037_ssr17 microsatellite FC925037_ssr17:17..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:13..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBA (ATP synthase subunit beta OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 47/150 (31.33%), Postives = 69/150 (46.00%), Query Frame = 3
Query:  180 VTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V +  D    P  Y  ++I +G+ T+       V  +       E T G+      V  T + +  PV   +LGR+FN  GKPIDN   +  E    I   + +  ++    EM +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFDSDSLPNLYNAISIDMGERTLIAEVEQHVGDDIVRTIAMEATEGLKRGMDAVD-TEKAISVPVGDKVLGRLFNVLGKPIDNAGEVEAEEIYPIHRPAPSFKDQAVEPEMFETGIKVIDLLAPYQRGGKIGLFGGAGV 156          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CHLP8 (ATP synthase subunit beta OS=Chlorobaculum parvum (strain NCIB 8327) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 55/208 (26.44%), Postives = 97/208 (46.63%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ-----------AGLVKRLEKTDNL----LEDGEEDNFAIV 734
            M+   ++ + GP+V +D  +G  P   + + +   DG+    +  +  GE+ V  +  EGT G+    +    TG  ++ PV  ++LGR+ N  G+PID   P+  +    I  S+    E +   EM +TGI  ID++   +RG K  LF  AG+    +  ++              AG+ +R  + ++L    +E G  D  A+V
Sbjct:    1 MQEGKISQIIGPVVDVDFPEGQLPSILDALTVTRQDGSKLVLETQQHLGEERVRTISMEGTDGLVRGMSVAN-TGRPIQAPVGAEVLGRMLNVVGEPIDGKGPVPSKKSYPIHRSAPKFDELSTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKEQSGYSVFAGVGERTREGNDLWHEMMESGVIDKTALV 207          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_PSEHT (ATP synthase subunit beta OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  228 PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            P  Y+ + +  GD T    +V +  G   V  +  GT+    +  +V  TGE ++ PV    LGRI N  G+PID   PI  E  + I  ++    E++   E+++TGI  ID++   A+G K+ LF  AG+
Sbjct:   24 PAVYDALRVTDGDLTGLTLEVQQQLGGGVVRTIAMGTTDGLRRGASVMNTGESIQVPVGKATLGRIMNVLGEPIDEAGPIGEEDRMSIHRAAPTYEEQSSSVELLETGIKVIDLVCPFAKGGKVGLFGGAGV 155          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_NOSP7 (ATP synthase subunit beta OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 52/165 (31.52%), Postives = 76/165 (46.06%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVD-------GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQI 650
            +T + GP+V + K  G K  +I N     GT   GQ + +        G+  V  V    T G+   F     TG  +  PV    LGRIFN  G+P+DN  P+  EA L I  S+   ++      + +TGI  +D++    RG KI LF  AG+    I  ++
Sbjct:   13 ITQIIGPVVDV-KFPGGKLPQIYNALKIVGTNESGQEINITVEVQQLLGDNQVRTVAMSSTEGLVRGFEVTD-TGAPITVPVGKATLGRIFNVLGEPVDNRGPVNAEASLPIHRSAPKFTDLETKPSVFETGIKVVDLLTPYRRGGKIGLFGGAGVGKTVIMMEL 175          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPA2_RHOS4 (ATP synthase subunit alpha 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 596
            +  +A  LV ++ + G +  E+V    G      G VL +D E   V + +  + + +  T V+ TG++L  PV   +LGR+ +  G+P+D  P ILPEA L+I   +    +R    E ++TG+  +D + ++ RGQ+
Sbjct:   29 IATLADGLVEVEGLPGARLGEVVRFAGG----AEGLVLTLDPETVQVALLDPGAALGSG-TEVRRTGQLLSVPVGQGLLGRVVDPLGRPLDGLPAILPEARLEIERPAPGIVDRDMVAEPVETGLLVVDALFAVGRGQR 162          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPA2_RHOS1 (ATP synthase subunit alpha 2 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 596
            +  +A  LV ++ + G +  E+V    G      G VL +D E   V + +  + + +  T V+ TG++L  PV   +LGR+ +  G+P+D  P ILPEA L+I   +    +R    E ++TG+  +D + ++ RGQ+
Sbjct:   29 IATLADGLVEVEGLPGARLGEVVRFAGG----AEGLVLTLDPETVQVALLDPGAALGSG-TEVRRTGQLLSVPVGQGLLGRVVDPLGRPLDGLPAILPEARLEIERPAPGIVDRDMVAEPVETGLLVVDALFAVGRGQR 162          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_LACPL (ATP synthase subunit beta OS=Lactobacillus plantarum GN=atpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  180 VTGVAGPLVILDKVKGPKYYEIVNIRL----GDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLD-ISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            V  V GP+V ++     K  +I N  +     D T+     LE+          +GT G+  +  TV+ TG  +  PV  + LGR+FN  G+ ID GP   P+A  + I   +    E T   E+++TGI  ID++    RG KI LF  AG+
Sbjct:    6 VVQVIGPVVDVEFSLNDKLPDINNALIIQKDNDDTLTVEVSLELGDGVVRTVAMDGTDGL-RRGMTVEDTGSSITVPVGKETLGRVFNVLGETIDGGPEFGPDAERNPIHRDAPKYDELTTSTEVLETGIKVIDLLAPYVRGGKIGLFGGAGV 157          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_COLP3 (ATP synthase subunit beta OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 3
Query:  228 PKYYEIVNIRLGDGTMRRGQVLEVD---GEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            P+ Y+ + I  GD     G VLEV    G   V  +  GTS    +   V  TG+ ++ PV ++ LGRI N  G+PID   PI  +    I   +   +E++   E+++TGI  ID++   A+G K+ LF  AG+
Sbjct:   24 PQVYDALKITEGD---LEGLVLEVQQQLGGGVVRTIAMGTSDGLRRGLNVVNTGQGIQVPVGVETLGRIMNVLGEPIDEAGPIGEKDRWSIHREAPAYAEQSMSNELLETGIKVIDLVCPFAKGGKVGLFGGAGV 155          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB_CHLCH (ATP synthase subunit beta OS=Chlorobium chlorochromatii (strain CaD3) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 58/208 (27.88%), Postives = 98/208 (47.12%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHN----EIAAQICRQ-------AGLVKRLEKTDNL----LEDGEEDNFAIV 734
            M+   ++ + GP+V +D  +G  P   + + ++  DG+    +  +  GE+ V  V  E T G+      V  TG  ++ PV  ++LGR+ N  G PID   P+  +    I  S+    + +   EM +TGI  ID++   +RG K  LF  AG+       E+   I +Q       AG+ +R  + ++L    +E G  D  A+V
Sbjct:    1 MQEGKISQIIGPVVDVDFPEGRLPSILDALTVKREDGSKLVLETQQHLGEERVRTVAMESTDGLVRGMGVVN-TGAAIQVPVGAEVLGRMLNVVGDPIDGRGPVNSKKTYSIHRSAPKFEDISTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGFSVFAGVGERTREGNDLWHEMMESGVIDKTALV 207          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: ATPB2_PSEA6 (ATP synthase subunit beta 2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  228 PKYYEIVNIRLGDGTMRRGQVLEVD---GEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 623
            PK Y+ + I  GD    +G  LEV    G   V  +  GT+    +  TV  TGE ++ PV    LGRI +  G PID   PI  E  + I   +    +++   E+++TGI  ID++   A+G K+ LF  AG+
Sbjct:   24 PKIYDALRITEGD---LQGLTLEVQQQLGGGVVRTIALGTTDGLRRGLTVDNTGEAIQVPVGKATLGRIMDVLGNPIDEAGPIGEEERMSIHREAPTYEDQSSSIELLETGIKVIDLVCPFAKGGKVGLFGGAGV 155          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ATPB_CLOBA5.342e-1131.33ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CHLP85.342e-1126.44ATP synthase subunit beta OS=Chlorobaculum parvum ... [more]
ATPB_PSEHT6.977e-1132.58ATP synthase subunit beta OS=Pseudoalteromonas hal... [more]
ATPB_NOSP76.977e-1131.52ATP synthase subunit beta OS=Nostoc punctiforme (s... [more]
ATPA2_RHOS46.977e-1130.22ATP synthase subunit alpha 2 OS=Rhodobacter sphaer... [more]
ATPA2_RHOS16.977e-1130.22ATP synthase subunit alpha 2 OS=Rhodobacter sphaer... [more]
ATPB_LACPL9.112e-1132.68ATP synthase subunit beta OS=Lactobacillus plantar... [more]
ATPB_COLP39.112e-1134.07ATP synthase subunit beta OS=Colwellia psychreryth... [more]
ATPB_CHLCH9.112e-1127.88ATP synthase subunit beta OS=Chlorobium chlorochro... [more]
ATPB2_PSEA69.112e-1134.07ATP synthase subunit beta 2 OS=Pseudoalteromonas a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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