FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925037_ssr17 microsatellite FC925037_ssr17:17..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:13..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB1_HUMAN (V-type proton ATPase subunit B, kidney isoform OS=Homo sapiens GN=ATP6V1B1 PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 2.787e-68
Identity = 132/188 (70.21%), Postives = 151/188 (80.32%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            YRTV  V GPLV+LD+VK  +Y EIV+  L DGT R GQVLEV G KA+VQVFEGTSGID + TT +FTG++L+TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+       + D  +DNFAIV
Sbjct:   41 YRTVCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDARKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK----SKAVLDYHDDNFAIV 224          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB1_BOVIN (V-type proton ATPase subunit B, kidney isoform OS=Bos taurus GN=ATP6V1B1 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.640e-68
Identity = 131/188 (69.68%), Postives = 152/188 (80.85%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            YRTV  V GPLV+LD+VK  +Y EIVN  L +GT R GQVLEV G KA+VQVFEGTSGID + TT +FTG++L+TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP +R YPEEMI+TGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+       + D  +DNFAIV
Sbjct:   41 YRTVCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQRSGQVLEVSGTKAIVQVFEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHDRIYPEEMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK----SKAVLDYHDDNFAIV 224          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CANTR (V-type proton ATPase subunit B OS=Candida tropicalis GN=VMA2 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.059e-67
Identity = 133/190 (70.00%), Postives = 151/190 (79.47%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y  V GV GPLVILD VK P+Y EIVN+ L DGT+R+GQVLEV G KA+VQVFEGTSGID K T V+FTGE LK PVS DMLGRIF+GSG+PID GP I  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLV+  +     + DG E+NF+IV
Sbjct:   26 INYTPVGGVNGPLVILDNVKFPRYNEIVNLTLPDGTVRQGQVLEVRGTKAIVQVFEGTSGIDVKKTRVEFTGENLKIPVSEDMLGRIFDGSGRPIDKGPKIFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRPTKD----VHDGHEENFSIV 211          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_NEUCR (V-type proton ATPase subunit B OS=Neurospora crassa GN=vma-2 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.383e-67
Identity = 133/190 (70.00%), Postives = 149/190 (78.42%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + Y TV GV GPLVILD VK P+Y EIV + L DGT R GQVLE  G +AVVQVFEGTSGID K T V+FTGE LK  VS DMLGRIF+GSG+ ID GP +L E YLDI+GS INP  R YP+EMI TGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLV+R   T+  + DG E+NF+IV
Sbjct:   16 IRYNTVGGVNGPLVILDNVKFPRYNEIVTLTLPDGTQRSGQVLEARGNRAVVQVFEGTSGIDVKKTKVEFTGESLKLGVSEDMLGRIFDGSGRAIDKGPKVLAEEYLDINGSPINPYAREYPQEMISTGISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVQRQGITNKGVHDGHEENFSIV 205          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.864e-67
Identity = 129/199 (64.82%), Postives = 156/199 (78.39%), Query Frame = 3
Query:  138 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            +E   +E  M YR + GV GPLVI+D ++  KY E+V++ L DG++R+GQVLEV G+KAV+QVFEGT+GID K T V FTGE +K  +S D+LGRIFNGSG+ ID GP I+PE YLDI G  +NP  R YPEEMIQTGIS+IDVMNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLVKR +  D+      +DNFAIV
Sbjct:    2 LESVRIEPKMSYRKIVGVNGPLVIMDNIRFLKYAEMVSLTLPDGSVRQGQVLEVSGKKAVIQVFEGTAGIDVKETQVTFTGETMKMGMSEDVLGRIFNGSGRVIDGGPKIIPEDYLDIQGQPLNPYARIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVKRKDSIDS-----SDDNFAIV 195          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PLAFA (V-type proton ATPase subunit B OS=Plasmodium falciparum GN=VAPB PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.965e-67
Identity = 127/190 (66.84%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            +EY+T++GV GPLVI++ VK PKY EIV I L D T R+GQ+LEV G+KAV+QVFEGTSGIDNK + V+ +G++LK P+S +MLGR+FNGSGKPID GP IL + YLDI+G+ INP  R YP+EMIQTGISTIDVMNSI RGQKIPLFSAAGLPHNEI AQICRQA LV+  +  D+      +DNFA+V
Sbjct:   30 LEYKTISGVQGPLVIIEDVKFPKYSEIVTIHLSDNTTRQGQILEVCGKKAVIQVFEGTSGIDNKNSYVEVSGDILKMPMSDEMLGRVFNGSGKPIDKGPNILADDYLDINGNPINPQCRVYPKEMIQTGISTIDVMNSIVRGQKIPLFSAAGLPHNEIGAQICRQASLVQGKDVLDH-----SDDNFAVV 214          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CAEBR (Probable V-type proton ATPase subunit B OS=Caenorhabditis briggsae GN=vha-12 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.884e-65
Identity = 130/188 (69.15%), Postives = 149/188 (79.26%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            Y+TV+GV GPLVIL+ VK P++ EIV I L DG+ R GQVLE+   KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQI RQ GLV+  ++        E+ NFAIV
Sbjct:   29 YQTVSGVNGPLVILNDVKFPQFSEIVKITLPDGSQRSGQVLEIAKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIVRQGGLVQLPDRPH------EQTNFAIV 210          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CAEEL (Probable V-type proton ATPase subunit B OS=Caenorhabditis elegans GN=vha-12 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.391e-65
Identity = 129/188 (68.62%), Postives = 148/188 (78.72%), Query Frame = 3
Query:  171 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            Y+TV GV GPLVIL+ VK P++ EIV I L DG+ R GQVLE+   KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSA+GLPHNEIAAQI RQ GLV+  ++        E+ NFAIV
Sbjct:   29 YQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQIVRQGGLVQLPDRPH------EQTNFAIV 210          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_TRYCO (V-type proton ATPase subunit B OS=Trypanosoma congolense PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.278e-64
Identity = 126/190 (66.32%), Postives = 148/190 (77.89%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            +EY T+  V GPLVIL  V+ P + EIVNI L DGTMRRGQVLEVDG+KAVVQVFEGTSGID   +  +FTG+V++  VS DMLGR+FNGSG PID+GPP+L E Y DI G  INP  R YPEEMIQTGIS+IDVM SI+RGQKIPLFS AGLPHNEIAAQI RQAGLV++         +G++++F IV
Sbjct:   25 LEYTTIRAVNGPLVILGDVRLPTFAEIVNIELSDGTMRRGQVLEVDGDKAVVQVFEGTSGIDVMRSKCEFTGKVMELGVSEDMLGRVFNGSGIPIDDGPPVLAEQYRDIQGIPINPRARVYPEEMIQTGISSIDVMTSISRGQKIPLFSGAGLPHNEIAAQIVRQAGLVRK---------EGKQEDFCIV 205          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_STRSV (V-type ATP synthase beta chain OS=Streptococcus sanguinis (strain SK36) GN=atpB PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54
Identity = 108/194 (55.67%), Postives = 141/194 (72.68%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + V  EYRTV+ V GPL+I+D+V G  + E+V I+L DG+ R+GQVLEV  +KA+VQ+FEG+SGI+ +   V+FTG  L+ PVS DM+GRIFNG GKPID GP ILPE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++              ++NFA+V
Sbjct:    1 MSVIKEYRTVSEVVGPLMIVDQVAGVHFNELVEIQLHDGSKRQGQVLEVQEDKAMVQLFEGSSGINLEKAKVRFTGRPLELPVSEDMVGRIFNGMGKPIDGGPAILPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVL------------NSDENFAVV 182          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB1_HUMAN2.787e-6870.21V-type proton ATPase subunit B, kidney isoform OS=... [more]
VATB1_BOVIN3.640e-6869.68V-type proton ATPase subunit B, kidney isoform OS=... [more]
VATB_CANTR1.059e-6770.00V-type proton ATPase subunit B OS=Candida tropical... [more]
VATB_NEUCR1.383e-6770.00V-type proton ATPase subunit B OS=Neurospora crass... [more]
VATB_ENCCU6.864e-6764.82V-type proton ATPase subunit B OS=Encephalitozoon ... [more]
VATB_PLAFA8.965e-6766.84V-type proton ATPase subunit B OS=Plasmodium falci... [more]
VATB_CAEBR2.884e-6569.15Probable V-type proton ATPase subunit B OS=Caenorh... [more]
VATB_CAEEL8.391e-6568.62Probable V-type proton ATPase subunit B OS=Caenorh... [more]
VATB_TRYCO9.278e-6466.32V-type proton ATPase subunit B OS=Trypanosoma cong... [more]
VATB_STRSV1.028e-5455.67V-type ATP synthase beta chain OS=Streptococcus sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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