FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925037_ssr17 microsatellite FC925037_ssr17:17..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:13..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_STRPI (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=atpB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.257e-52
Identity = 101/194 (52.06%), Postives = 140/194 (72.16%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              ++NFA+V
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVL------------NSDENFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_STRP4 (V-type ATP synthase beta chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=atpB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.257e-52
Identity = 101/194 (52.06%), Postives = 140/194 (72.16%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              ++NFA+V
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVL------------NSDENFAVV 182          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_DESSY (V-type ATP synthase beta chain OS=Desulfurococcus sp. (strain SY) GN=atpB PE=3 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.257e-52
Identity = 105/190 (55.26%), Postives = 132/190 (69.47%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            MEY TV+ + GPL+I++ VKG  Y E+V I    G  R+GQVLE     A+VQVFEGT  +D K T+V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+V
Sbjct:    4 MEYSTVSKIYGPLMIVEGVKGVAYGEVVEIETESGEKRKGQVLEARENLAIVQVFEGTRDLDVKTTSVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVV 181          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THESI (V-type ATP synthase beta chain OS=Thermococcus sp. (strain KI) GN=atpB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.641e-52
Identity = 105/190 (55.26%), Postives = 131/190 (68.95%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            MEY TV+ + GPL+I+  VKG  Y E+V I    G  R+GQVLE   + A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+V
Sbjct:    4 MEYSTVSKIYGPLMIVQGVKGVAYGEVVEIETESGEKRKGQVLEAREDMAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVV 181          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PYRKO (V-type ATP synthase beta chain OS=Pyrococcus kodakaraensis GN=atpB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.641e-52
Identity = 105/190 (55.26%), Postives = 131/190 (68.95%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            MEY TV+ + GPL+I+  VKG  Y E+V I    G  R+GQVLE   + A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+V
Sbjct:    6 MEYSTVSKIYGPLMIVQGVKGVAYGEVVEIETESGEKRKGQVLEAREDMAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THEGJ (V-type ATP synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpB PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 105/190 (55.26%), Postives = 131/190 (68.95%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            MEY TV+ + GPL+I++ VKG  Y E+V I    G  R+GQVLE     A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+V
Sbjct:    4 MEYSTVSKIYGPLMIVEGVKGVAYGEVVEIETESGEKRKGQVLEARENLAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVV 181          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_GOSHI (V-type proton ATPase subunit B 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 3
Query:  417 GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIP FSAAGLPHNEIAAQICRQAGLVKRLEK  +LLEDGEEDNFAIV
Sbjct:    1 GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPFFSAAGLPHNEIAAQICRQAGLVKRLEKAGDLLEDGEEDNFAIV 106          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: NTPB_ENTHR (V-type sodium ATPase subunit B OS=Enterococcus hirae GN=ntpB PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 98/165 (59.39%), Postives = 129/165 (78.18%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRT+  V GPL+ ++KV G KY E++ +R+ +G +RRGQVLEV  +KA+VQ+FEGTSGI+ K ++V+F G  L+  VS DM+GR+F+G G+P DNGP ILPE YLDI+G  INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THEON (V-type ATP synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=atpB PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52
Identity = 103/190 (54.21%), Postives = 131/190 (68.95%), Query Frame = 3
Query:  165 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            MEY TV+ + GPL+I+  VKG  Y E+V I    G  R+GQVLE   + A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGR+FNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTG+S ID MN++ RGQK+P+FS +GLPHN +AAQI RQA ++            GEE+ FA+V
Sbjct:    6 MEYSTVSKIYGPLMIVQGVKGVAYGEVVEIETESGEKRKGQVLEARQDMAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRVFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGVSAIDGMNTLVRGQKLPIFSGSGLPHNMLAAQIARQAKVL------------GEEEQFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_PYRFU (V-type ATP synthase beta chain OS=Pyrococcus furiosus GN=atpB PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.146e-52
Identity = 103/192 (53.65%), Postives = 134/192 (69.79%), Query Frame = 3
Query:  159 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            +A EY T++ + GPL+I++ VKG  Y E+V I    G  R+GQVL+     A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN++AAQI RQA ++            GEE++FA+V
Sbjct:    1 MAKEYSTISRIYGPLMIVEGVKGVAYGEVVEIETEWGEKRKGQVLDARENLAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNKLAAQIARQAKVL------------GEEESFAVV 180          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_STRPI1.257e-5252.06V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_STRP41.257e-5252.06V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_DESSY1.257e-5255.26V-type ATP synthase beta chain OS=Desulfurococcus ... [more]
VATB_THESI1.641e-5255.26V-type ATP synthase beta chain OS=Thermococcus sp.... [more]
VATB_PYRKO1.641e-5255.26V-type ATP synthase beta chain OS=Pyrococcus kodak... [more]
VATB_THEGJ2.144e-5255.26V-type ATP synthase beta chain OS=Thermococcus gam... [more]
VATB2_GOSHI2.144e-5296.23V-type proton ATPase subunit B 2 (Fragment) OS=Gos... [more]
NTPB_ENTHR2.144e-5259.39V-type sodium ATPase subunit B OS=Enterococcus hir... [more]
VATB_THEON2.800e-5254.21V-type ATP synthase beta chain OS=Thermococcus onn... [more]
VATB_PYRFU8.146e-5253.65V-type ATP synthase beta chain OS=Pyrococcus furio... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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