FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925037_ssr17 microsatellite FC925037_ssr17:17..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:13..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THEPX (V-type ATP synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=atpB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.470e-50
Identity = 96/189 (50.79%), Postives = 137/189 (72.49%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+TV  + GPL++++KV+G KY E+V I  G G +RRGQVLEV+G+KA+VQ+FEG++G++     V+F G+ ++  VS+DMLGR+F+G G+P D GP I+PE  LDI+G+ INP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA ++            G +  FA+V
Sbjct:    4 EYKTVREIVGPLMLVEKVEGVKYNELVEIETGSGEIRRGQVLEVNGDKALVQLFEGSTGLNINDCKVRFVGKSIELGVSIDMLGRVFDGLGRPRDKGPMIIPEKRLDINGNPINPTARDYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLAAQIARQAKVL------------GTDSKFAVV 180          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_THEP3 (V-type ATP synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.470e-50
Identity = 96/189 (50.79%), Postives = 137/189 (72.49%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+TV  + GPL++++KV+G KY E+V I  G G +RRGQVLEV+G+KA+VQ+FEG++G++     V+F G+ ++  VS+DMLGR+F+G G+P D GP I+PE  LDI+G+ INP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA ++            G +  FA+V
Sbjct:    4 EYKTVREIVGPLMLVEKVEGVKYNELVEIETGTGEIRRGQVLEVNGDKALVQLFEGSTGLNINDCKVRFVGKSIELGVSIDMLGRVFDGLGRPRDKGPMIIPEKRLDINGNPINPTARDYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLAAQIARQAKVL------------GSDSKFAVV 180          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METJA (V-type ATP synthase beta chain OS=Methanocaldococcus jannaschii GN=atpB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.470e-50
Identity = 104/195 (53.33%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  150 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            T   A+EY +V  +AGPL+I++ V+G  Y EIV +   DG  R GQVLE     AVVQVFEGT+G+  K T V+FTG   K  VS++MLGRIFNG+GKPID GP I+PE  LDI+G  +NP  R  P + IQTGISTID MN++ RGQK+P+FS +GLPHN++AAQI RQA +             GE + FA+V
Sbjct:    3 TAASAIEYSSVKSIAGPLLIVEGVEGAAYGEIVEVICPDGEKRMGQVLEAREGLAVVQVFEGTTGLSTKDTRVRFTGRTAKIGVSMEMLGRIFNGAGKPIDGGPEIVPEKELDINGYPLNPVSRKVPSDFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNQLAAQIARQAKV------------RGEGEKFAVV 185          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METAC (V-type ATP synthase beta chain OS=Methanosarcina acetivorans GN=atpB PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.625e-50
Identity = 102/189 (53.97%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+T+T +AGPL+ ++K +   Y EIVNI++ DGT+RRGQVL+   +  VVQVFEGT G+D K   V FTGE LK P S+D+LGRI +GSG P D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +             G E  FA+V
Sbjct:    4 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMTDGTVRRGQVLDSSSDIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASIDLLGRILSGSGDPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASV------------PGSESAFAVV 179          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CLOTH (V-type ATP synthase beta chain OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.301e-49
Identity = 96/189 (50.79%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EYRT+T VAGPL+++ KV+G KY E+  I L +G +RR +VLEVDG+ A+VQ+FE ++GI+   + V+F G  ++ PVS+DMLGR+F+G GKP+D GP I+P+  LDI+G  +NP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA ++            G +  FA+V
Sbjct:    4 EYRTITEVAGPLMLVQKVEGVKYGELGEIELANGEIRRCKVLEVDGQNALVQLFESSTGINVATSKVRFLGRSIELPVSMDMLGRVFSGMGKPLDGGPNIIPDKRLDINGLPMNPAARNYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLAAQIARQAKVL------------GTDSKFAVV 180          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_UNCMA (V-type ATP synthase beta chain OS=Uncultured methanogenic archaeon RC-I GN=atpB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.699e-49
Identity = 97/172 (56.40%), Postives = 130/172 (75.58%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLE 683
            EY+T++ +AGPL+ + K +   Y E+VNI L DGT++RGQVL+   +   VQVFEGTSGI ++ ++V+F GE +K PVS DMLGRI +GSG+P+D GP I+PE  L+I G++INP  R  P++ IQTGISTID MN++ RGQK+P+FS +GLPHNEIA QI RQA +V   E
Sbjct:    3 EYKTISEIAGPLLFVRKTEPVGYQELVNIVLSDGTVKRGQVLDSSNDVVAVQVFEGTSGI-SRDSSVKFLGETIKMPVSKDMLGRILSGSGEPLDGGPAIIPEKRLEIVGAAINPYSRRQPKDFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNEIALQIARQAKVVGSTE 173          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METBA (V-type ATP synthase beta chain OS=Methanosarcina barkeri GN=atpB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.699e-49
Identity = 99/189 (52.38%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+T+T +AGPLV ++K +   Y EIV I L DGT RRG+VL+   +  V+Q+FEGT+G+D +   V FTGE LK P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +             G E  FA+V
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINLPDGTTRRGEVLDSSSDIVVIQIFEGTTGLDKECGVV-FTGETLKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAAV------------PGSESAFAVV 179          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METBF (V-type ATP synthase beta chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=atpB PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.897e-49
Identity = 98/189 (51.85%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+T+T +AGPLV ++K +   Y EIV I + DGT RRG+VL+   +  V+Q+FEGT+G+D +   V FTGE LK P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +             G E  FA+V
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINMPDGTTRRGEVLDSSSDIVVIQIFEGTTGLDKECGVV-FTGETLKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAAV------------PGSESAFAVV 179          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METMJ (V-type ATP synthase beta chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.455e-49
Identity = 96/165 (58.18%), Postives = 125/165 (75.76%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRTV  +AGPLV ++K +   Y E+VNI   DGT++RGQVL+   E  VVQVFE T+GI  + + ++FTGE +K PV  DMLGRI +G GKPID GP I+PE  L+I+G++INP  R+ PE+ IQTGISTID  N++ RGQK+P+FSA+GLPHN++A QI RQA
Sbjct:    3 EYRTVAQIAGPLVFVEKTEPVGYSELVNIVTADGTVKRGQVLDTSDEIVVVQVFETTAGI-GRDSGIRFTGETIKMPVGKDMLGRILSGGGKPIDGGPDIVPEKRLEITGAAINPYARSSPEDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNDVALQIARQA 166          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METPE (V-type ATP synthase beta chain OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=atpB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.430e-49
Identity = 97/165 (58.79%), Postives = 123/165 (74.55%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRT+  +AGPLV ++K +   Y E+VNI L DGT++RGQVL+   +  VVQVFE T+GI  K + V+FTGE +K PV  DMLGRI +GSGKPID GP I+PE  LDI+G++INP  R  P + I+TGISTID  N++ RGQK+P+FS AGLPHN +A QI RQA
Sbjct:    3 EYRTINKIAGPLVFIEKTEPIGYEELVNIVLYDGTIKRGQVLDTSDDLVVVQVFETTTGI-GKDSGVRFTGETIKMPVGRDMLGRILSGSGKPIDGGPEIVPEKRLDITGAAINPYARASPSDFIETGISTIDGTNTLVRGQKLPIFSGAGLPHNNVALQIARQA 166          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_THEPX4.470e-5050.79V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_THEP34.470e-5050.79V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_METJA4.470e-5053.33V-type ATP synthase beta chain OS=Methanocaldococc... [more]
VATB_METAC7.625e-5053.97V-type ATP synthase beta chain OS=Methanosarcina a... [more]
VATB_CLOTH1.301e-4950.79V-type ATP synthase beta chain OS=Clostridium ther... [more]
VATB_UNCMA1.699e-4956.40V-type ATP synthase beta chain OS=Uncultured metha... [more]
VATB_METBA1.699e-4952.38V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_METBF2.897e-4951.85V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_METMJ6.455e-4958.18V-type ATP synthase beta chain OS=Methanoculleus m... [more]
VATB_METPE8.430e-4958.79V-type ATP synthase beta chain OS=Methanosphaerula... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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