FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925037_ssr17 microsatellite FC925037_ssr17:17..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:13..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB1_METHJ (V-type ATP synthase beta chain 1 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.101e-48
Identity = 101/189 (53.44%), Postives = 132/189 (69.84%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EYRT+T VAGPLV ++K +   Y E+VN+ L DG+ +RGQVL+   +  VVQVFE T+GI  K T V+FTGE +K PV  DMLGRI +G+GKP D GP I+PE  L+I+G++INP  R  P + IQTGISTID+ N++ RGQK+P+FS +GLPHNEIA QI RQA +             G ++ FA+V
Sbjct:    3 EYRTITQVAGPLVFVEKTEPVGYQELVNLVLADGSEKRGQVLDTSDDIVVVQVFETTTGI-GKDTGVRFTGETIKMPVGKDMLGRILSGAGKPKDGGPDIVPEKRLEITGAAINPWARGSPRQFIQTGISTIDLTNTLVRGQKLPIFSGSGLPHNEIALQIARQAKV------------PGSDEQFAVV 178          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METB6 (V-type ATP synthase beta chain OS=Methanoregula boonei (strain 6A8) GN=atpB PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.438e-48
Identity = 95/165 (57.58%), Postives = 123/165 (74.55%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRT+T +AGPLV ++K +   Y E+VNI L DGT++RGQVL+   +  VVQ+FE T+GI  + + V+FTGE +K PV  +MLGRI +G GKPID GP I+PE  LDI+G++INP  R  P + IQTGISTID  N++ RGQK+P+FS AGLPHN +A QI RQA
Sbjct:    3 EYRTITKIAGPLVFVEKTEPIGYQELVNIVLSDGTIKRGQVLDTSDDLVVVQIFETTTGI-GRDSGVRFTGETIKMPVGREMLGRILSGGGKPIDGGPEIVPEKRLDITGAAINPWARNSPSDFIQTGISTIDGTNTLVRGQKLPIFSGAGLPHNNVALQIARQA 166          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_ARCFU (V-type ATP synthase beta chain OS=Archaeoglobus fulgidus GN=atpB PE=3 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.878e-48
Identity = 100/189 (52.91%), Postives = 130/189 (68.78%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+T+T VAGPLV ++K +   Y E+V I L DG+ RRGQVL+   +  VVQVFEGT G+D   +TV+FTG+++K   S DMLGRI +GSG+PID GP I+PE    I G++INP  R YP E IQTGIS ID MN++ RGQK+P+FS +GLPHN+IA QI RQA +             GE + FA++
Sbjct:    3 EYKTITQVAGPLVFVEKTEPVAYGELVTITLPDGSTRRGQVLDTSKDVVVVQVFEGTRGVDTS-STVRFTGDIVKLNCSQDMLGRILSGSGEPIDGGPKIVPEERRPIVGAAINPYARQYPREFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNDIALQIARQAKV------------RGEGEEFAVI 178          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_STAMF (V-type ATP synthase beta chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpB PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.203e-48
Identity = 97/180 (53.89%), Postives = 125/180 (69.44%), Query Frame = 3
Query:  195 GPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            G L+I + +KG  Y E+V + LG G  R GQV++V  +  ++QVF G S ID K + V++ GE LK PVS+DMLGRIF+G G+PID GPPI+PE YLDI+GS INP+ R  P E I+TGIS ID +NSI RGQK+P+FS +GLPHN IAAQI RQA +             G+E+ FA+V
Sbjct:   19 GSLLIAEPMKGVSYGEVVEVVLGSGETRLGQVIDVSRDATIIQVFGGVSDIDLKISKVRYRGETLKLPVSIDMLGRIFDGLGRPIDGGPPIVPEDYLDINGSPINPASRLPPSEFIETGISAIDGLNSIVRGQKLPIFSGSGLPHNRIAAQIVRQARV------------RGKEEKFAVV 186          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_HALMA (V-type ATP synthase beta chain OS=Haloarcula marismortui GN=atpB PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.137e-48
Identity = 97/192 (50.52%), Postives = 132/192 (68.75%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEED---NFAIV 734
            EY+T+T ++GPLV ++  +   Y +IV I L DG  RRGQVLE   +   +QVFEGT GID    +V+F GE +K PV+ D+LGR+ +G+G+PID GP I+P+   DI G +INP  R YPEE IQTG+S ID MN++ RGQK+P+FSA+GLPHN++A QI RQA + +         EDGE+D    FA++
Sbjct:    3 EYQTITEISGPLVFVETDEPVGYDDIVEIELSDGETRRGQVLESASDYVAIQVFEGTEGIDRD-ASVRFLGETMKMPVTEDLLGRVMDGTGQPIDGGPEIVPDERRDIVGEAINPFSREYPEEFIQTGVSAIDGMNTLVRGQKLPIFSASGLPHNDLALQIARQATVPEE--------EDGEDDEGSEFAVI 185          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METBU (V-type ATP synthase beta chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.321e-48
Identity = 93/165 (56.36%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EY+T+  V+GPL+ L+K +   Y E+V I L DGT +RGQVL+   +  VVQVFEGT G+ N+ + V F+GE +K PVS DMLGRI +G+G+P+D GP I+P+  +DI+G+S+NP  R  PE+ IQTGISTID  N++ RGQK+P+FS +GLPHNEIA QI RQA
Sbjct:    4 EYKTIVEVSGPLIFLEKTEPVGYGELVQINLPDGTTKRGQVLDTSADMVVVQVFEGTVGL-NEESGVVFSGETIKLPVSKDMLGRILSGAGEPLDGGPRIIPDKRVDINGASMNPYSRMPPEDFIQTGISTIDGTNTLVRGQKLPIFSGSGLPHNEIALQIARQA 167          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METM6 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=atpB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.542e-47
Identity = 98/194 (50.52%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+V
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGVAYGEIVDITTPNGEKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVV 185          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB2_METHJ (V-type ATP synthase beta chain 2 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB2 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.542e-47
Identity = 99/199 (49.75%), Postives = 134/199 (67.34%), Query Frame = 3
Query:  138 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            M+ G+L + +EY+TV  V+GPL+ +++ K   + E   I L DG  R GQ+L++  + AVVQVFEGT GID+  TTV+FTG+     VS DMLGR+ +G G+P D GP I+PEA LDI+G  INP  R  P E IQTGIS ID +N++ RGQK+P+FS AGLP N++AAQI +QA ++            GE +NFA+V
Sbjct:    1 MQHGSL-ITVEYQTVNYVSGPLIFVERPKEISFGETAQIILPDGEARTGQILDISEDIAVVQVFEGTRGIDSHVTTVRFTGQSPLLDVSYDMLGRVLDGVGRPRDGGPEIIPEARLDIAGMPINPYSRDKPAEFIQTGISAIDALNTLVRGQKLPIFSGAGLPANQLAAQIAKQAKVL------------GEGENFAVV 186          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METM7 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.626e-47
Identity = 98/194 (50.52%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+V
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVV 185          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_META3 (V-type ATP synthase beta chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.626e-47
Identity = 96/195 (49.23%), Postives = 130/195 (66.67%), Query Frame = 3
Query:  150 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            +LE  +EY +V+ +AGPL++++ +KG  Y EIV+I    G  R GQVLE   + AVVQVFEGT+ ++   T ++F GE  K  VS DMLGRIFNG+GKP+D GP I+ E  +DI+G  +NP  R  P + +QTGISTID  N++ RGQKIP+FS +GLPHN +AAQI RQA +             G ++ FA+V
Sbjct:    3 SLEKNIEYTSVSSIAGPLIVVEGIKGVAYGEIVSITCPSGEKRTGQVLEAREDVAVVQVFEGTTALNTSETKIRFVGETAKLGVSTDMLGRIFNGAGKPLDGGPDIIAEDKIDINGYPLNPVSRQSPNDFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNLLAAQIARQAKV------------RGSDEQFAVV 185          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB1_METHJ1.101e-4853.44V-type ATP synthase beta chain 1 OS=Methanospirill... [more]
VATB_METB61.438e-4857.58V-type ATP synthase beta chain OS=Methanoregula bo... [more]
VATB_ARCFU1.878e-4852.91V-type ATP synthase beta chain OS=Archaeoglobus fu... [more]
VATB_STAMF3.203e-4853.89V-type ATP synthase beta chain OS=Staphylothermus ... [more]
VATB_HALMA7.137e-4850.52V-type ATP synthase beta chain OS=Haloarcula maris... [more]
VATB_METBU9.321e-4856.36V-type ATP synthase beta chain OS=Methanococcoides... [more]
VATB_METM63.542e-4750.52V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB2_METHJ3.542e-4749.75V-type ATP synthase beta chain 2 OS=Methanospirill... [more]
VATB_METM74.626e-4750.52V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_META34.626e-4749.23V-type ATP synthase beta chain OS=Methanococcus ae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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