FC925037

Overview
NameFC925037
Unique NameFC925037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925037_ssr17 microsatellite FC925037_ssr17:17..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:13..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METMP (V-type ATP synthase beta chain OS=Methanococcus maripaludis GN=atpB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.041e-47
Identity = 97/194 (50.00%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+V
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEEKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVV 185          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_HALVO (V-type ATP synthase beta chain OS=Halobacterium volcanii GN=atpB PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.041e-47
Identity = 98/189 (51.85%), Postives = 128/189 (67.72%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+T+T ++GPLV  +  +   Y EIV I    G  +RGQVLE       +QVFEGTSGID    +V+F GE LK PV+ D+LGR+ +GSG+PID GP I+P+   DI G++INP  R YPEE IQTG+S ID MN++ RGQK+P+FSA+GLPHN++A QI RQA + +         E GEE  FA+V
Sbjct:    3 EYQTITEISGPLVFAEVDEPIGYDEIVEIETPQGETKRGQVLESSEGLVAIQVFEGTSGIDRN-ASVRFLGETLKMPVTEDLLGRVLDGSGQPIDGGPEIVPDERRDIVGAAINPYSREYPEEFIQTGVSAIDGMNTLVRGQKLPIFSASGLPHNDLALQIARQATVPED-------EESGEESEFAVV 183          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CLOBM (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.890e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CLOBL (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.890e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CLOBK (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Okra / Type B1) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.890e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CLOBH (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.890e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_CLOB1 (V-type ATP synthase beta chain OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.890e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 662
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METTP (V-type ATP synthase beta chain OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=atpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.031e-46
Identity = 93/189 (49.21%), Postives = 132/189 (69.84%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+T+T ++GPLV ++K +   Y E+V IR   G ++RGQVL+   E  VVQVFEGT G+ +K ++V+FTG+V+K P+S  ++GR+ +GSG+P D GPPI+PE   +I G++INP+ R  P   IQTGISTID  N++ RGQK+P+FS AGLPHN++A QI RQA ++            GE + FA+V
Sbjct:    4 EYKTITEISGPLVFVEKTEPVGYGELVEIRTASGEVKRGQVLDTSDEIVVVQVFEGTGGL-SKDSSVRFTGDVIKMPLSPSIIGRVLSGSGRPRDGGPPIVPEVEREIIGAAINPASREKPRAFIQTGISTIDGTNTLVRGQKLPIFSGAGLPHNDVALQIARQAKVL------------GEAEEFAVV 179          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METM5 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=atpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.031e-46
Identity = 97/194 (50.00%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  153 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+V
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSHDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVV 185          
BLAST of FC925037 vs. ExPASy Swiss-Prot
Match: VATB_METLZ (V-type ATP synthase beta chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=atpB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.346e-46
Identity = 99/189 (52.38%), Postives = 128/189 (67.72%), Query Frame = 3
Query:  168 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 734
            EY+TV+ VAGPL+ ++K +   Y E V++ L DGTM+RGQVL+   +  VVQ FE T+G+  + T V+F GE  K PVS  MLGRI +G GKPID GP I+P+  LDI+G++INP  R  P + IQTGISTID  N++ RGQK+P+FS+AGLPHNEIA QI RQA +             G  D FA+V
Sbjct:    3 EYKTVSKVAGPLLFVEKTEPVSYEEQVSLVLADGTMKRGQVLDTSEDLVVVQCFETTTGL-GRDTGVRFLGETFKMPVSKTMLGRILSGGGKPIDGGPAIVPDKRLDINGAAINPYARGTPRDFIQTGISTIDGTNTLVRGQKLPIFSSAGLPHNEIALQIARQAKV------------PGSSDEFAVV 178          
The following BLAST results are available for this feature:
BLAST of FC925037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_METMP6.041e-4750.00V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_HALVO6.041e-4751.85V-type ATP synthase beta chain OS=Halobacterium vo... [more]
VATB_CLOBM7.890e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBL7.890e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBK7.890e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBH7.890e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOB17.890e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_METTP1.031e-4649.21V-type ATP synthase beta chain OS=Methanosaeta the... [more]
VATB_METM51.031e-4650.00V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METLZ1.346e-4652.38V-type ATP synthase beta chain OS=Methanocorpuscul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB10FM1 TF Citrus clementina cDNA clone KN0AAP8YB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925037 ID=FC925037; Name=FC925037; organism=Citrus clementina; type=EST; length=736bp
CTCATTGCCCCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCACACACACTCACAGAGATCACAAGAAAGGCCCAAAAAAGAAAA
AAAATTGCAAATGGGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTA
CTCTGGAAGTCGCCATGGAGTACAGAACAGTCACCGGAGTTGCTGGGCCT
CTAGTTATCCTTGATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAA
TATTCGGTTGGGAGATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTG
ATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGAC
AATAAATTTACAACTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGT
CTCATTGGATATGCTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTG
ATAATGGTCCCCCAATTTTGCCGGAGGCTTACTTGGATATATCCGGAAGT
TCTATCAACCCTAGTGAGAGAACCTATCCTGAAGAGATGATACAGACAGG
GATTTCTACCATTGATGTGATGAACTCCATTGCTAGAGGACAAAAGATCC
CTCTTTTTTCTGCTGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATT
TGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCT
TGAGGATGGGGAAGAGGACAACTTTGCAATTGTGTT
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