FC925041

Overview
NameFC925041
Unique NameFC925041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_KLULA (Protoheme IX farnesyltransferase, mitochondrial OS=Kluyveromyces lactis GN=COX10 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 75/180 (41.67%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  310 SLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            SL + Y   Y +LSK RL++LV+ ++   +AL       L  L  T  GT + +ASAN++N   E   D +M RT  RP+  G +S   A  +A++ G  GT++L    N   A L  SN+ LYA++YT LK+ H +NTWVGA+VGAIPPL+GW A+          L   LY WQ PHF
Sbjct:  133 SLKKTYIEPYLQLSKPRLTVLVMLSAICSYALSPYPATVLQLLSLT-VGTTLCSASANAINMGREPDFDRQMIRTQARPVVRGIVSPNQAFKFATAAGTLGTSILWLGVNPTVAFLGFSNIALYAWLYTSLKRKHIINTWVGALVGAIPPLMGWAASSPLSHPGAWCLAGLLYAWQFPHF 311          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_SHELP (Protoheme IX farnesyltransferase 1 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.691e-28
Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y E++K R+  L++ T   G  L     + +  L     G  M+A +A + N L +   D  M RT  RPLP GRIS+  A+T+A+++ + G ALL W  N LTA L  ++LI YA +YT  LK+  P N  VG + GA+PPLLGWTA  G    + ++L   ++ W  PHF
Sbjct:   18 RAYLEMTKPRVVALMLLTVLVGMCLAVPGAVPVQPLIAGLVGIGMMAGAAAAYNHLIDRRIDGLMARTYNRPLPKGRISITKALTFATAMAILGFALLYWAVNPLTAWLTFASLIGYAVIYTAYLKRATPQNIVVGGLAGAMPPLLGWTAITGEFHGHALLLVIIIFAWTPPHF 191          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_SHEPA (Protoheme IX farnesyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=cyoE PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.001e-28
Identity = 71/174 (40.80%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L    T+ L  L     G  M+A SA + N L +   D  M RT  RPLP GRIS+  A+++AS +G  G  +L    N LTA L  ++LI YA VYT  LK+  P N  VG + GA+PPLLGWTA  G    N ++L   ++ W  PHF
Sbjct:   19 RAYYEMTKPKVVALMLLTVLVGMCLAVPGTVPLVPLIAGMAGIGMMAGSAAAFNHLIDRRIDGLMARTYNRPLPKGRISIIKAISFASILGTLGFIILYALVNPLTAWLTFASLIGYAVVYTAYLKRATPQNIVVGGLAGAMPPLLGWTAVTGEFHGNALLLVIIIFAWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_SYNP2 (Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctaB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 66/174 (37.93%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            + Y++L+K R+  L++ T+     + S   ID   L  T  G  + AASA +LN +++   D  M+RT +RP+PSGR+  RHA+ +A  +G    +LL    N+L+A LA S ++ Y  VYT  LK+ H  N  +G   G+IPPL+GW A  G +  +  IL A ++ W  PHF
Sbjct:   18 KSYYQLTKPRIIPLLLITTAASMWIASHGHIDPVKLLITLLGGTLAAASAQTLNCIYDQDIDFSMQRTRKRPIPSGRVQPRHALIFALILGSLSFSLLMVFVNLLSACLALSGIVFYMLVYTHWLKRHHVQNIVIGGAAGSIPPLVGWAAVTGQLDWSAWILFALIFLWTPPHF 191          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_SHEHH (Protoheme IX farnesyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=cyoE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.782e-27
Identity = 68/174 (39.08%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L     + +  L     G  M+A SA + N L +   D  M RT  RPLP GR+S+  A+T++ S+G+ G  +L    N LTA L  ++LI YA VYT  LK+  P N  VG + GA+PPLLGWTA  G    N ++L   ++ W  PHF
Sbjct:   19 RAYYEMTKPKVVALMLLTVLVGMCLAVPGVVPIVPLIAGMAGIGMMAGSAAAFNHLIDRRIDGLMARTYNRPLPKGRVSIAKALTFSCSLGILGFVVLYVLVNPLTAWLTFASLIGYAVVYTAYLKRATPQNIVVGGLAGAMPPLLGWTAVTGEFHGNALLLVIIIFAWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_IDILO (Protoheme IX farnesyltransferase OS=Idiomarina loihiensis GN=cyoE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.782e-27
Identity = 69/175 (39.43%), Postives = 102/175 (58.29%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAG-TALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K R+  L++ T+  G  L +   + L  L    TG  +++A+A ++N L +   DAKM RT+RRPLP G +S     T+A+S+GV G   L AW  N LTA L  ++++ YA VYT  LK+  P N  +G + GA PPLLGWT+    ++   ++L   ++ W  PHF
Sbjct:   18 RDYLELTKPRVVALLLLTAVVGMCLATEELVSLKVLVPALTGIGLMSAAAAAINHLVDRHIDAKMARTLRRPLPQGNLSPAKVTTFAASIGVIGFVTLYAW-VNPLTAWLTFASMVGYAVVYTMFLKRATPQNIVIGGLAGAAPPLLGWTSVTNEINAPAVLLVMIIFTWTPPHF 191          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_SYNY3 (Protoheme IX farnesyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=ctaB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.328e-27
Identity = 65/174 (37.36%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            + Y++L+K R+  L++ T+     + S   +DL  L  T  G  + AASA +LN +++   D +M RT  RP+P+G++  RHA+ +A ++GV   ALLA   N+L+  LA S ++ Y  VYT  LK+    N  +G   G+IPPL+GW A  G +S    +L A ++ W  PHF
Sbjct:   19 KSYYQLTKPRIIPLLLITTAASMWIASEGRVDLPKLLITLLGGTLAAASAQTLNCIYDQDIDYEMLRTRARPIPAGKVQPRHALIFALALGVLSFALLATFVNVLSGCLALSGIVFYMLVYTHWLKRHTAQNIVIGGAAGSIPPLVGWAAVTGDLSWTPWVLFALIFLWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_SHEAM (Protoheme IX farnesyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=cyoE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.971e-27
Identity = 66/174 (37.93%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y E++K ++  L++ T   G  L     + L  L     G  M+A +A ++N L +   D  M RT  RPLP G++ V HA T+A+ + + G A L W  N LTA L  ++L+ YA VYT  LK+  P N  +G + GA+PPLLGWTA       +G++L   ++ W  PHF
Sbjct:   19 RAYLEMTKPKVVTLMLLTVLVGMCLALPGAVPLQPLIAGMLGIAMMAGAAAAMNHLIDRRIDGLMARTYNRPLPKGKVPVSHAATFAALLALLGFACLYWLVNPLTAWLTLASLLGYAVVYTAYLKRATPQNIVIGGLAGAMPPLLGWTAVTNDFHGHGLLLVIIIFAWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_SHEWM (Protoheme IX farnesyltransferase 1 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.846e-27
Identity = 67/174 (38.51%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L     + L  L +   G  M+A +A + N L +   D  M RT  RPLP GR+S+  A+T++ S+ V G  LL    N LTA L  ++L+ YA VYT  LK+  P N  VG + GA+PPLLGWT+  G    N ++L   ++ W  PHF
Sbjct:   20 RAYYEMTKPKVVALMLLTVLVGMCLALPGAVPLQPLIFGLLGIGMMAGAAAAFNHLIDRRIDGLMARTYNRPLPKGRVSITKALTFSISLAVLGFVLLYTLVNELTAWLTFASLLGYAVVYTAYLKRATPQNIVVGGLAGAMPPLLGWTSVTGEFHGNALLLVIIIFAWTPPHF 193          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_ALHEH (Protoheme IX farnesyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=cyoE PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.509e-26
Identity = 72/174 (41.38%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y  L+K R+ +L+V T+  G  L S   +    L     G  + A SA +LN L +   DA M RT RRPLPSG +     + ++S +GVAG  +LA   N LTA L  ++LI YA VYT  LK+  P N  +G   GA PPLLGWTA  G V  + ++L   ++ W  PHF
Sbjct:   16 RDYLTLTKPRVVVLMVFTAIVGMFLASPGQVPWVALTVGSLGIALAAGSAAALNHLADQRIDAIMARTRRRPLPSGHLRPLQVLGFSSLLGVAGLGMLALWINPLTAALTFASLIGYALVYTLYLKRATPQNIVIGGAAGAAPPLLGWTAVTGSVDAHALLLFLIVFVWTPPHF 189          
The following BLAST results are available for this feature:
BLAST of FC925041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
COX10_KLULA3.591e-2841.67Protoheme IX farnesyltransferase, mitochondrial OS... [more]
CYOE1_SHELP4.691e-2839.66Protoheme IX farnesyltransferase 1 OS=Shewanella l... [more]
CYOE_SHEPA8.001e-2840.80Protoheme IX farnesyltransferase OS=Shewanella pea... [more]
COXX_SYNP21.365e-2737.93Protoheme IX farnesyltransferase OS=Synechococcus ... [more]
CYOE_SHEHH1.782e-2739.08Protoheme IX farnesyltransferase OS=Shewanella hal... [more]
CYOE_IDILO1.782e-2739.43Protoheme IX farnesyltransferase OS=Idiomarina loi... [more]
COXX_SYNY32.328e-2737.36Protoheme IX farnesyltransferase OS=Synechocystis ... [more]
CYOE_SHEAM3.971e-2737.93Protoheme IX farnesyltransferase OS=Shewanella ama... [more]
CYOE1_SHEWM8.846e-2738.51Protoheme IX farnesyltransferase 1 OS=Shewanella w... [more]
CYOE_ALHEH1.509e-2641.38Protoheme IX farnesyltransferase OS=Alkalilimnicol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 TF Citrus clementina cDNA clone KN0AAP8YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925041 ID=FC925041; Name=FC925041; organism=Citrus clementina; type=EST; length=851bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTAAA
TGGAATGATTCTCCCTGCAGCTCTCTATTTTTGGCAAAAACCCCATTTTA
T
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