FC925041

Overview
NameFC925041
Unique NameFC925041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_GRAFK (Protoheme IX farnesyltransferase OS=Gramella forsetii (strain KT0803) GN=ctaB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.509e-26
Identity = 71/169 (42.01%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  343 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            E++K RL++ VV +S  G+ LG+  TID   +     G  ++  ++N+ NQ+ E + DA M RT  RPLP+GR+SV  A T AS+  V G  +L +  N  TA   A ++ LY  +YTPLK   P++ +VGA  GAIP +LGW AA G  S+    L    +FWQ PHF
Sbjct:   19 EITKMRLAISVVFSSVAGYFLGA-DTIDFVTVTLLAIGGYLMVGASNAYNQIIERNLDALMDRTKNRPLPAGRMSVPVAFTIASAFTVLGLVVL-YVINPKTAMFGAISIFLYVSIYTPLKTKTPLSVFVGAFPGAIPFMLGWVAASGSFSIEPGTLFMIQFFWQFPHF 185          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_ANADE (Protoheme IX farnesyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=ctaB PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.971e-26
Identity = 72/168 (42.86%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            LSK RLS LV+ T   G  L  G  I  A    T   T +V  +AN+LN   E   DA+M+RT  RPLP+GR+    A+    +       +L+  AN LTA LA   L+ Y  VYTP+KQ      +VGA+ GAIPPL+GWT+  G V   G+ L   L+ WQ PHF
Sbjct:   24 LSKPRLSGLVMITCAGGMWLAPGQ-IGAARAVLTVLATAVVVGAANALNCYLERDIDARMRRTRDRPLPAGRVDPFVALGLGIAAPAFAIPILSLAANGLTALLALVALLTYVLVYTPMKQRSATALFVGAVPGAIPPLMGWTSVTGGVDAGGLALFGLLFAWQLPHF 190          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_ASHGO (Protoheme IX farnesyltransferase, mitochondrial OS=Ashbya gossypii GN=COX10 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.574e-26
Identity = 70/171 (40.94%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            Y +L+K RL++LV+ ++   +AL       L  L  T  GT + +A+AN +N   E   D +M RT  RP+  G ++   A  +++  GV GTA+L    N   A L ASN++LY++ YT LK+ H +NTW GAI GAIPPL+GW AA          L   LY WQ PHF
Sbjct:  125 YIQLAKPRLTVLVMLSAICSYALSPYPATVLELLSLT-VGTTLCSAAANGINMGREPDFDRQMMRTQARPVVRGLVTPMQAYKFSAVSGVIGTAILYAGVNPTVALLGASNIVLYSWFYTSLKRKHIINTWFGAITGAIPPLMGWAAASPLTHPGCWCLAGLLYAWQFPHF 294          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_COLP3 (Protoheme IX farnesyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=cyoE PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 63/174 (36.21%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y++++K ++  L+V T+  G +L     +    L     G  +++++A ++N + +   D  M RT  RPLP+G+ISV +A+ +A+S+ + G  +L    N LTA L  + L+ Y+FVYT  LK+  P N  +G + GAIPPLLGWTA    V  N ++L   ++ W  PHF
Sbjct:   22 RAYYDITKPKVVALLVLTALVGMSLSVPGALPWQRLIPAMLGIGLLSSAAAAINHIVDEKIDTVMGRTHNRPLPAGKISVTNAIVFATSIALLGFIILYALVNPLTAFLTLAGLVGYSFVYTMYLKRATPQNITIGGLAGAIPPLLGWTAMTNEVVPNALLLVLIIFTWTPPHF 195          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_PSEPF (Protoheme IX farnesyltransferase 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=cyoE1 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 68/174 (39.08%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K ++ +L++ TS  G  L + + +    L +   G  + A  A ++N + +   DA M RT +RPL  GR+S   A+T+A  + + G ALL    N LTA L  ++L+ YA +YT  LK+  P N  +G + GA PPLLGWTAA GHVS   ++L   ++ W  PHF
Sbjct:   15 RDYLELTKPKVVVLMLITSLVGMFLATRAGVPWTVLVFGNLGIALCAGGAAAVNHVVDRRIDAVMARTHKRPLADGRVSPTGALTFALVLALLGQALLLTFTNPLTAWLTLASLLGYAVIYTGFLKRATPQNIVIGGLAGAAPPLLGWTAATGHVSAEPLLLVLIIFAWTPPHF 188          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_SYNJA (Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ctaB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 68/174 (39.08%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y +L K ++  L++ T  T  A+      D      T  G  M AA+AN +N +++   D  M+RT  RPLPSGRI  RHA+ +A  + V    LLA   N+L A LA + +++Y  VYT  LK+  P N  +G   GAIPPL+GW AA G +S    ++ A ++ W  PHF
Sbjct:   17 RSYSQLVKPKIIALLLMT--TAGAMWMAGNTDPFKFGVTLLGGGMAAAAANVINMVYDADIDRMMERTRHRPLPSGRIRARHALRFAGILAVMSFGLLACFTNLLAASLAMAGILVYVGVYTHWLKRSSPQNIVIGGAAGAIPPLVGWAAATGELSWAAWVMFALIFLWTPPHF 188          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_PSEF5 (Protoheme IX farnesyltransferase 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 68/174 (39.08%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K ++ +L++ TS  G  L + + +    L +   G  + A  A ++N + +   DA M RT +RPL  GR+S R A+ +A  + +AG ALL    N LTA L  ++L+ YA VYT  LK+  P N  +G + GA PPLLGW AA GH+S   ++L   ++ W  PHF
Sbjct:   16 RDYLELTKPKVVVLMLITSLVGMFLATRAGVPWTVLVFGNLGIALCAGGAAAVNHVVDRRIDALMARTHKRPLAEGRVSPRAALAFALLLALAGQALLLTFTNPLTAWLTLASLLGYAVVYTGFLKRATPQNIVIGGLAGAAPPLLGWVAATGHMSAEPLLLVLIIFAWTPPHF 189          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_TRIEI (Protoheme IX farnesyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=ctaB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 64/174 (36.78%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            + Y++L+K R+ +L++ T+  G  LG+   + L  L  T TG  + + +AN++N +++   D  M+RT  RP+PSGR+  R A+ +A ++      LL   AN+L A LA S ++ Y  VYT   + H V N  +G   GAIPPL+GW A  G +S    +L A +  W  PHF
Sbjct:   21 KSYYQLTKPRIILLLLITTAAGMWLGAKGEVSLFLLFVTLTGGALASGAANAINCIYDSDIDYIMERTRWRPIPSGRVKPRDALIFALTLAATSFTLLTVFANLLAALLAMSGIVFYVGVYTHWLKRHSVQNIVIGGAAGAIPPLVGWAAVTGELSWAAWLLFAIIVVWTPPHF 194          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_SHESH (Protoheme IX farnesyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=cyoE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.780e-26
Identity = 67/174 (38.51%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L    ++ L  L     G  M+A +A + N L +   D  M RT  RPLP GR+S+  A+T+A S+   G  LL    N LTA L  ++LI YA VYT  LK+  P N  VG + GA+PPLLGWT+  G    + ++L   ++ W  PHF
Sbjct:   22 RPYYEMTKPKVVALMLLTVLVGMCLAVPGSVPLQPLVIGMIGIGMMAGAAAAFNHLIDRKIDGLMARTYNRPLPKGRVSIPKALTFAISLAALGFVLLYTLVNELTAWLTFASLIGYALVYTAYLKRATPQNIVVGGLAGAMPPLLGWTSVTGEFHGHALLLVIIIFAWTPPHF 195          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_SHESM (Protoheme IX farnesyltransferase 1 OS=Shewanella sp. (strain MR-4) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.780e-26
Identity = 65/174 (37.36%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L   + + +  L     G  M+A SA +LN L +   D  M RT  RPLP GR+S R A+ +A+ +G  G  +L    N LTA L  ++LI YA +YT  LK+  P N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF
Sbjct:   18 RAYFEMTKPKVVALMLLTVLVGMCLAMPTILPVKPLVAGLLGIAMMAGSAAALNHLIDRRIDGMMARTYNRPLPKGRVSARRALLFAALLGSLGFVILYVFTNPLTAWLTFASLIGYALIYTAYLKRATPQNIVIGGLAGAMPPLLGWTAVTNQFHGHALLLVIIIFLWTPPHF 191          
The following BLAST results are available for this feature:
BLAST of FC925041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
COXX_GRAFK1.509e-2642.01Protoheme IX farnesyltransferase OS=Gramella forse... [more]
COXX_ANADE1.971e-2642.86Protoheme IX farnesyltransferase OS=Anaeromyxobact... [more]
COX10_ASHGO2.574e-2640.94Protoheme IX farnesyltransferase, mitochondrial OS... [more]
CYOE_COLP34.390e-2636.21Protoheme IX farnesyltransferase OS=Colwellia psyc... [more]
CYOE1_PSEPF4.390e-2639.08Protoheme IX farnesyltransferase 1 OS=Pseudomonas ... [more]
COXX_SYNJA4.390e-2639.08Protoheme IX farnesyltransferase OS=Synechococcus ... [more]
CYOE1_PSEF55.734e-2639.08Protoheme IX farnesyltransferase 1 OS=Pseudomonas ... [more]
COXX_TRIEI5.734e-2636.78Protoheme IX farnesyltransferase OS=Trichodesmium ... [more]
CYOE_SHESH9.780e-2638.51Protoheme IX farnesyltransferase OS=Shewanella sed... [more]
CYOE1_SHESM9.780e-2637.36Protoheme IX farnesyltransferase 1 OS=Shewanella s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 TF Citrus clementina cDNA clone KN0AAP8YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925041 ID=FC925041; Name=FC925041; organism=Citrus clementina; type=EST; length=851bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTAAA
TGGAATGATTCTCCCTGCAGCTCTCTATTTTTGGCAAAAACCCCATTTTA
T
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