FC925041

Overview
NameFC925041
Unique NameFC925041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_MARAV (Protoheme IX farnesyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=cyoE PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K R+  L++ TS  G  L +    + + L +   G  ++A +A  +N + +   D  M RT +RP+ +GRI+   A+ +A+ +   G  +L W+ N LTA L  ++L+ YA VYT  LK+  P N  +G + GA+PPLLGWTA  G V  + ++L   ++ W  PHF
Sbjct:   18 RDYLELTKPRVVALMILTSVIGMLLAAPGVPEWSVLLFGNLGIALLAGAAAVVNHVVDQKIDTVMARTRKRPVATGRIAPLDALLFATVLAALGMVVLVWQVNELTAWLTLASLVGYAGVYTLFLKRATPQNIVIGGLAGAMPPLLGWTAVTGQVEGHALLLVLIIFAWTPPHF 191          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE2_SHESW (Protoheme IX farnesyltransferase 2 OS=Shewanella sp. (strain W3-18-1) GN=cyoE2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 64/174 (36.78%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L   + + +  L     G  ++A SA +LN L +   D  M RT  RPLP GR+S + A+ +A+S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLAVPTAVPVQPLIAGMFGIALMAGSAAALNHLIDRRIDGMMARTYNRPLPKGRVSAKRALIFAASIGGLGFVVLYVLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAVTNQFHGHALLLVIIIFTWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE2_SHEFN (Protoheme IX farnesyltransferase 2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=cyoE2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 67/174 (38.51%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L     + L  L     G  M+A SA + N L +   D  M RT  RPLP G+IS   AVT+A S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA    +    ++L   ++ W  PHF
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLSVPGIVPLQPLVAGMAGIAMMAGSAAAFNHLIDRKIDGLMARTYNRPLPKGKISTTKAVTFAVSLGSLGFVVLYTLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAITNELHGYALLLVIIIFTWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_SHEPC (Protoheme IX farnesyltransferase 1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 64/174 (36.78%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L   + + +  L     G  ++A SA +LN L +   D  M RT  RPLP GR+S + A+ +A+S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLAVPTAVPVQPLIAGMFGIALMAGSAAALNHLIDRRIDGMMARTYNRPLPKGRVSAKRALIFAASIGGLGFVVLYVLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAVTNQFHGHALLLVIIIFTWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_ANAVT (Protoheme IX farnesyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ctaB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 61/172 (35.47%), Postives = 97/172 (56.40%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            Y++L+K R+  L++ T+     + +   +D   L  T  G  + AASA ++N +++   D  M+RT  RP+PSG++ VR A+ +A ++ V    LL   AN+L A LA S +I Y  +YT  LK+    N  +G   GAIP L+GW A  G +S +  ++ A ++ W  PHF
Sbjct:   21 YYQLTKPRIIPLLLITTAGSMWIAAQGQVDPVLLLVTMAGGTLAAASAQTINCIYDRDIDYDMERTRHRPMPSGKVQVRDALIFAIALAVLSFTLLTVFANLLAASLALSGIIFYVLIYTHWLKRHSTQNIVIGGAAGAIPALVGWAAVTGTLSWSAWLIFAIVFLWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_SACD2 (Protoheme IX farnesyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=cyoE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.081e-24
Identity = 66/174 (37.93%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K  +  L++ TS  G  L     + +  L     G  + A SA ++N L +   D KM RT  RP+  GRI    A+ +A+ +G+AG A+L    N LTA L  ++L+ YAF+YT  LK+  P N  +G + GA PPLLGW A  G V  + ++L   ++ W  PHF
Sbjct:   16 RDYLELTKPNVVALMLLTSLIGMLLAVPGMVPIDILILGNLGIALCAGSAAAVNHLVDRKVDLKMARTFNRPIAKGRIDPTKAILFAAILGLAGMAILMVWVNHLTAWLTLASLVGYAFIYTFWLKRATPQNIVIGGLAGAAPPLLGWVAVTGEVHGHALLLVLIIFAWTPPHF 189          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_PSEU5 (Protoheme IX farnesyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=cyoE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.081e-24
Identity = 65/174 (37.36%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K ++ +L++ TS  G  L + + +    L +   G  + A  A ++N + +   D+ M RT +RPL  GR+S   A+T+A  +GV+G ALL    N L A L  ++LI YA +YT  LK+  P N  +G + GA PPLLGW A  G V+   ++L   ++ W  PHF
Sbjct:   15 RDYLELTKPKVVLLMLITSLVGMFLATRAGVPWTVLLFGNLGIALCAGGAAAVNHVVDRQIDSVMARTHKRPLAEGRVSPAAALTFAFVLGVSGLALLLTFTNALAAWLTLASLIGYAVIYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVTGQVTAEPLLLVLIIFAWTPPHF 188          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_TERTT (Protoheme IX farnesyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=cyoE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.845e-24
Identity = 65/174 (37.36%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+EL+K ++ ML++ TS  G  L + S   L  L     G  + A +A ++N L +   D KM RT  RP+ +GRI+  +A+ +++ +G  G  +L+   N LTA L  ++L+ YA +YT  LK+  P N  +G + GA PPLLGWTA  G +  +G++L   ++ W  PHF
Sbjct:   23 RDYYELTKPKVVMLMLLTSLIGMLLATPSPAPLWLLVLGNLGIGLCAGAAAAVNHLVDRHVDVKMARTFHRPVANGRITPTNALLFSALLGGVGLWILSSFINALTAWLTLASLLGYAVIYTLFLKRATPQNIVIGGLAGAAPPLLGWTAVTGELDGHGLLLVLIIFAWTPPHF 196          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_SHEB5 (Protoheme IX farnesyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=cyoE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.845e-24
Identity = 66/174 (37.93%), Postives = 94/174 (54.02%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L     + +  L     G  M+A SA +LN L +   D  M RT  RPLP GRIS   A+ +A+S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLAVPHAVPVQPLLAGMLGIAMMAGSAAALNHLIDRRIDGLMARTYNRPLPKGRISATRALIFAASLGSLGFIVLYSLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAVTNEFHGHALLLVIIIFTWTPPHF 192          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_SHEB9 (Protoheme IX farnesyltransferase 1 OS=Shewanella baltica (strain OS195) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.845e-24
Identity = 66/174 (37.93%), Postives = 94/174 (54.02%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y+E++K ++  L++ T   G  L     + +  L     G  M+A SA +LN L +   D  M RT  RPLP GRIS   A+ +A+S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLAVPHAVPVQPLLAGMLGIAMMAGSAAALNHLIDRRIDGLMARTYNRPLPKGRISATRALIFAASLGSLGFIVLYSLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAVTNEFHGHALLLVIIIFTWTPPHF 192          
The following BLAST results are available for this feature:
BLAST of FC925041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
CYOE_MARAV8.280e-2536.21Protoheme IX farnesyltransferase OS=Marinobacter a... [more]
CYOE2_SHESW8.280e-2536.78Protoheme IX farnesyltransferase 2 OS=Shewanella s... [more]
CYOE2_SHEFN8.280e-2538.51Protoheme IX farnesyltransferase 2 OS=Shewanella f... [more]
CYOE1_SHEPC8.280e-2536.78Protoheme IX farnesyltransferase 1 OS=Shewanella p... [more]
COXX_ANAVT8.280e-2535.47Protoheme IX farnesyltransferase OS=Anabaena varia... [more]
CYOE_SACD21.081e-2437.93Protoheme IX farnesyltransferase OS=Saccharophagus... [more]
CYOE_PSEU51.081e-2437.36Protoheme IX farnesyltransferase OS=Pseudomonas st... [more]
CYOE_TERTT1.845e-2437.36Protoheme IX farnesyltransferase OS=Teredinibacter... [more]
CYOE_SHEB51.845e-2437.93Protoheme IX farnesyltransferase OS=Shewanella bal... [more]
CYOE1_SHEB91.845e-2437.93Protoheme IX farnesyltransferase 1 OS=Shewanella b... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 TF Citrus clementina cDNA clone KN0AAP8YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925041 ID=FC925041; Name=FC925041; organism=Citrus clementina; type=EST; length=851bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTAAA
TGGAATGATTCTCCCTGCAGCTCTCTATTTTTGGCAAAAACCCCATTTTA
T
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