FC925041

Overview
NameFC925041
Unique NameFC925041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_GLOVI (Protoheme IX farnesyltransferase OS=Gloeobacter violaceus GN=ctaB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.039e-23
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  337 YWELSKARLS-MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            Y++L+K R+  +L++ T+G  +  G G    L  L  T  G  + A+SAN+ N L +   D  M+RT RR +P+GRI    A  +A+++GVA  A+LA  AN+  A LA S +  Y  +YT  LK+    N  +G   GAIPPL+GW A  G +  +  +L   ++ W  PHF
Sbjct:   23 YYQLTKPRIQVLLLITTAGAMWIAGKGHVEPLL-LLVTLLGGTLAASSANAFNCLIDRDIDLLMERTRRRAIPAGRILPWQAALFATALGVASFAVLAAFANLFAALLAISGIGFYVVIYTLWLKRTTTQNIVIGGAAGAIPPLVGWAAVTGDLGWSAWVLFGIIFMWTPPHF 194          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_LEGPL (Protoheme IX farnesyltransferase OS=Legionella pneumophila (strain Lens) GN=cyoE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 65/174 (37.36%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL K R+ +L++ T   G  L +   + L  + +T  G  + A SA ++N L +   D+ M RT +RP+  GR+SV+ A+ +A  +G+ G +LL    N LTA L    LI YA VYT  LK+    N  +G + GA PPLLGWTA    +    ++L   ++ W  PHF
Sbjct:   14 RDYVELCKPRVVLLMLLTVIVGMYLAAPGWVSLRLIAFTLLGIGLCAGSAAAINHLVDRHIDSIMARTKKRPVAYGRVSVKQALWFAVIIGLMGLSLLILFVNQLTALLTFITLIGYAGVYTGYLKRATSQNIVIGGLAGAAPPLLGWTAVTDQLDPQALLLVLIIFTWTPPHF 187          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_LEGPH (Protoheme IX farnesyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=cyoE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 65/174 (37.36%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL K R+ +L++ T   G  L +   + L  + +T  G  + A SA ++N L +   D+ M RT +RP+  GR+SV+ A+ +A  +G+ G +LL    N LTA L    LI YA VYT  LK+    N  +G + GA PPLLGWTA    +    ++L   ++ W  PHF
Sbjct:   14 RDYVELCKPRVVLLMLLTVIVGMYLAAPGWVSLRLIAFTLLGIGLCAGSAAAINHLVDRHIDSIMARTKKRPVAYGRVSVKQALWFAVIIGLMGLSLLILFVNQLTALLTFVTLIGYAGVYTGYLKRATSQNIVIGGLAGAAPPLLGWTAVTDQLDPQALLLVLIIFTWTPPHF 187          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_LEGPC (Protoheme IX farnesyltransferase OS=Legionella pneumophila (strain Corby) GN=cyoE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 65/174 (37.36%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL K R+ +L++ T   G  L +   + L  + +T  G  + A SA ++N L +   D+ M RT +RP+  GR+SV+ A+ +A  +G+ G +LL    N LTA L    LI YA VYT  LK+    N  +G + GA PPLLGWTA    +    ++L   ++ W  PHF
Sbjct:   14 RDYVELCKPRVVLLMLLTVIVGMYLAAPGWVSLRLIAFTLLGIGLCAGSAAAINHLVDRHIDSIMARTKKRPVAYGRVSVKQALWFAVIIGLMGLSLLILFVNQLTALLTFVTLIGYAGVYTGYLKRATSQNIVIGGLAGAAPPLLGWTAVTDQLDPQALLLVLIIFTWTPPHF 187          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE_AZOVD (Protoheme IX farnesyltransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=cyoE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 65/174 (37.36%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K ++ +L++ TS  G  L S + +    L +   G  + A +A ++N + +   DA M RT RRPL  GR++   A+ +A ++ VAG ALL    N L A L  ++L+ YA +YT  LK+  P N  +G + GA PPLLGW A  G +S   ++L   ++ W  PHF
Sbjct:   15 RDYLELTKPKVVVLMLITSLVGMFLASRAGVPWTVLLFGNLGIGLCAGAAAAVNHVVDRRIDALMARTRRRPLAEGRVAPLAALGFALALAVAGMALLLTFTNPLAAWLTLASLLGYAVLYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVSGQLSAEPLLLVLIVFTWTPPHF 188          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: CYOE1_PSEPG (Protoheme IX farnesyltransferase 1 OS=Pseudomonas putida (strain GB-1) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 64/174 (36.78%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+K ++ +L++ TS  G  L + + +  + L +   G  + A  A  +N + +   DA M RT +RPL  GR+    A+ +A ++ + G ALL    N LTA L  ++L+ YA +YT  LK+  P N  +G + GA PPLLGW A  GHVS   ++L   ++ W  PHF
Sbjct:   13 RDYLELTKPKVVVLMLITSLAGMFLATRAGVSWSVLLFGNLGIGLCAGGAAVVNHVVDRRIDALMARTHKRPLAQGRVEPLPALLFALALALLGMALLLAFTNALTAWLTLASLLGYAVLYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVSGHVSAEPLLLVLIIFAWTPPHF 186          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_THET8 (Protoheme IX farnesyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ctaB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 66/174 (37.93%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y  L+K R+  L++ T+  G  + +     L        G  M+A +AN++N + +   DA+MKRT +RP  + R+S R A+ +A ++ V G A+L W AN+L A LA   LI Y  VYT  LK+    N  +G   GA PPL+GW A  G +SL    L A ++FW   HF
Sbjct:  328 RDYLALTKPRVISLLLFTALFGALIAAKGWPGLGVFLAVALGGYMMAGAANAINMVVDRDIDARMKRTAKRPTVTQRVSSRDALLFAFALAVLGFAVLWWGANLLAATLALMGLIWYVLVYTLYLKRRTWHNIVIGGAAGAFPPLVGWAAVTGELSLFAWYLFALIFFWTPVHF 501          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_THET2 (Protoheme IX farnesyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ctaB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 66/174 (37.93%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y  L+K R+  L++ T+  G  + +     L        G  M+A +AN++N + +   DA+MKRT +RP  + R+S R A+ +A ++ V G A+L W AN+L A LA   LI Y  VYT  LK+    N  +G   GA PPL+GW A  G +SL    L A ++FW   HF
Sbjct:  328 RDYLALTKPRVISLLLFTALFGALIAAKGWPGLGVFLAVALGGYMMAGAANAINMVVDRDIDARMKRTAKRPTVTQRVSSRDALLFAFALAVLGFAVLWWGANLLAATLALMGLIWYVLVYTLYLKRRTWHNIVIGGAAGAFPPLVGWAAVTGELSLFAWYLFALIFFWTPVHF 501          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_ROSS1 (Protoheme IX farnesyltransferase OS=Roseiflexus sp. (strain RS-1) GN=ctaB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 59/172 (34.30%), Postives = 93/172 (54.07%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            Y  L+K  +  L++ T+ T   +      +L+ + WT  G  ++A+ ++S+N   +   D  M RT RRP+PSGRI   HA+    ++GV    +LA   N+L A LA +  + Y F+YT  LK+    N  +G   GA PPL+GW A  G ++   ++L   ++FW  PHF
Sbjct:  254 YISLTKPGVISLLILTTITSMYITPAGIPELSLVLWTTLGGWLMASGSHSINCYLDKDIDVNMGRTGRRPIPSGRIPAWHALALGIALGVVAFVILALFVNLLAAILALAGFLYYVFIYTIWLKRTSKHNIVIGGGAGAFPPLVGWAAVTGSLAPEALLLWLIVFFWTPPHF 425          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_CYAP4 (Protoheme IX farnesyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ctaB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            Y++L+K RL +L + T+  G  + +   +D      T     M A SAN++N L++   D  M+RT  RPLPSGR+    A+ +A ++ V   +L    AN+L+A L  + + +Y  VYT  LK+    N  +G   GAIPPL+GW A  G +S    +L A ++ W  PHF
Sbjct:   23 YYQLTKPRLIVLFLITTAAGMWVAARGEVDPVLALITLLTGAMAAGSANTINCLYDRDIDYIMERTRHRPLPSGRVQPWEALVFAIALAVGAFSLQTLCANLLSACLEMAGIAVYVGVYTHWLKRSSTQNIVIGGAAGAIPPLVGWAAVTGELSWAAWVLFAIIFIWTPPHF 194          
The following BLAST results are available for this feature:
BLAST of FC925041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
COXX_GLOVI2.039e-2337.57Protoheme IX farnesyltransferase OS=Gloeobacter vi... [more]
CYOE_LEGPL2.663e-2337.36Protoheme IX farnesyltransferase OS=Legionella pne... [more]
CYOE_LEGPH2.663e-2337.36Protoheme IX farnesyltransferase OS=Legionella pne... [more]
CYOE_LEGPC2.663e-2337.36Protoheme IX farnesyltransferase OS=Legionella pne... [more]
CYOE_AZOVD2.663e-2337.36Protoheme IX farnesyltransferase OS=Azotobacter vi... [more]
CYOE1_PSEPG2.663e-2336.78Protoheme IX farnesyltransferase 1 OS=Pseudomonas ... [more]
COXX_THET82.663e-2337.93Protoheme IX farnesyltransferase OS=Thermus thermo... [more]
COXX_THET22.663e-2337.93Protoheme IX farnesyltransferase OS=Thermus thermo... [more]
COXX_ROSS12.663e-2334.30Protoheme IX farnesyltransferase OS=Roseiflexus sp... [more]
COXX_CYAP42.663e-2336.05Protoheme IX farnesyltransferase OS=Cyanothece sp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 TF Citrus clementina cDNA clone KN0AAP8YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925041 ID=FC925041; Name=FC925041; organism=Citrus clementina; type=EST; length=851bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTAAA
TGGAATGATTCTCCCTGCAGCTCTCTATTTTTGGCAAAAACCCCATTTTA
T
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