FC925044

Overview
NameFC925044
Unique NameFC925044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.194e-44
Identity = 109/249 (43.78%), Postives = 141/249 (56.63%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKS 780
            R+  V GNWK NG +  V ++++ +  G                 ++      L+     + AQN      GAFTGEISA ML        I+GHSERRL+  ESNE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L A  +PE+A A +IIYGGSV   N  EL A PD+DG L+GGASL+   F+ I  S
Sbjct:    2 RRPLVVGNWKMNGRSASVARLLNDILAG--IGDCKAEVGVCVPFVYIPQASEILKGTKVMLGAQNVADHNSGAFTGEISAGMLREFGCELAIVGHSERRLLYGESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSVKPENSAELFAMPDIDGGLIGGASLDARAFLSICHS 247          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.201e-43
Identity = 108/247 (43.72%), Postives = 141/247 (57.09%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHV-AAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++++ L + +                +L L K +      V  AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      S++  +V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    ++A    I YGGSVN AN  EL  QPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELIANLRK-ELAGVTGCAVAIAPPDIYLDLAKHAADGSHIVLGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.568e-43
Identity = 105/247 (42.51%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIK 777
            R+  V GNWK NG  ++V ++VS + E                  ++  V+  LR     V AQN + K  GA+TGE+SA ML + D  +V++GHSERR   +E   FV  K  +    G+  + CVGETL +RE G T  V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L    +   A    +IYGGSVN  N K L + PD+DG LVGGASLN  +F++I+K
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEE-LIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPC (Triosephosphate isomerase OS=Legionella pneumophila (strain Corby) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.568e-43
Identity = 105/247 (42.51%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIK 777
            R+  V GNWK NG  ++V ++VS + E                  ++  V+  LR     V AQN + K  GA+TGE+SA ML + D  +V++GHSERR   +E   FV  K  +    G+  I CVGETL +RE G T  ++A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L    +   A    +IYGGSVN  N K L + PD+DG LVGGASLN  +F++I+K
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEE-LIGFDCAAQVAVMPPSIYIPKVRDCLRTGRIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGETLSERENGKTEQIIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.568e-43
Identity = 107/251 (42.63%), Postives = 140/251 (55.78%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEG--QXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK NG+      +++ +  G                     GL+  +      + AQ+    + GA+TGE+S  ML   D  +VI+GHSERR    E+NE +  K   AL+ GL  I CVGETL+QREAG T  VVA Q   +   +  S  + IV+AYEPVWAIGTGK ATP  AQEVH  LRK L A  + E A   RI+YGGS+   N KEL A  D+DG L+GGA+L   +F+ I+ +A
Sbjct:    2 RRKLVAGNWKMNGSLAANTLLLTEIKSGLGNATSDVAVCVPSPYFAQCQGLLNGAA---IALGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAKNA-EAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIVHAA 248          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.048e-43
Identity = 106/249 (42.57%), Postives = 137/249 (55.02%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNP-EFIDIIKSA 783
            R+  V GNWK N T   V+ +++ L +                     +   +        AQ+C V   GAFTGE SA ML      + ++GHSERR+I  ES+E V DK A     GL  + C+GETLEQ EAG T  VV AQ +A+  +  ++S +N V+ YEPVWAIGTGK ATP  AQE+   +R WL A     +A   +I+YGGSV  AN  EL  Q D+DG LVGGASL+  EF  +I  A
Sbjct:    2 RQALVMGNWKLNATKGSVEALINGLVDAAKDNATVEVAVCPPAVFIPQVEALTADTAITYGAQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWL-AEQDAAVANKVQILYGGSVKPANSAELFGQADIDGGLVGGASLDAVEFSKVISGA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.048e-43
Identity = 107/251 (42.63%), Postives = 148/251 (58.96%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRP-DFHVAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+ FV GNWK +G    +K +V+ LN  +                +L   K+ L   +  +  QN  ++   GA+TGE SA ML ++   +VILGHSERR I  E+++ +  KV  AL  GL  I CVGETLE+RE+G    V++ Q  A+   V    ++++V+AYEPVWAIGTGK A+  QAQ+VH  +R  L A  +P +A    I YGGSV   N  EL +QPD+DG L+GGASLN  +FI I ++A
Sbjct:    2 RQLFVAGNWKMHGDKASIKTLVTGLN-AKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAIGTGKTASAQQAQDVHAFIRGQL-AKLNPSVAEKVIIQYGGSVKPNNASELFSQPDIDGGLIGGASLNADDFIAICQAA 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.675e-43
Identity = 106/251 (42.23%), Postives = 145/251 (57.77%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PDFHVAAQNCWVK-KGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK +GT   V ++   L  G                 F+  V   L     +V AQN  V+ + GA TGE++   L  +   +V++GHSERR I+ ES+E +  K A A   GL  + C+GETL +REAG T+ VV  Q  ++ D   + +++N V+AYEPVWAIGTG  A+P QAQ+VH  +RK L A    E+AA  +++YGGSV  AN  EL   PD+DG L+GGASLN  EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVVELTQGL--GNMSLPSGVEVAVFPPSLFVTQVIDGLEGKGINVGAQNSAVQPEQGALTGEVAPSQLAEVGCKYVLVGHSERRQIIGESDEVLNQKFAAAQKSGLTPVLCIGETLAEREAGETLKVVGRQLSSVIDAFGIKAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQL-AAMDAEVAANVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPL (Triosephosphate isomerase OS=Legionella pneumophila (strain Lens) GN=tpiA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.675e-43
Identity = 105/247 (42.51%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIK 777
            R+  V GNWK NG  ++V ++VS + E                  ++  V+  LR     V AQN + K  GA+TGE+SA ML + D  +V++GHSERR   +E   FV  K  +    G+  + CVGETL +RE G T  V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L    +   A    +IYGGSVN  N K L + PD+DG LVGGASLN  +F++I+K
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQI-EKLIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CYTH3 (Triosephosphate isomerase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tpiA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.675e-43
Identity = 104/249 (41.77%), Postives = 142/249 (57.03%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVS-VLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-NPEFIDIIKS 780
            RK  + GNWK N T EE   + S V N  +                 L  V   +     + AQN + K+ GAFTGEISA ML ++ + +VI+GHSERR    E+N+ + DKV  +L+ GL  + C GETL QREAG  ++ V AQ       +S   +  +V+AYEP+WAIGTG  A+  QAQE+H ++R+ L +     +A    I+YGGS+   N K L A  D+DG L+GGASL + +FIDI KS
Sbjct:    2 RKKVIAGNWKMNKTLEEGLSLASEVANMAKDEVPADVNLVMCIPYISLAAVSKVINDKVAIGAQNVYQKESGAFTGEISAPMLKSVGVKYVIIGHSERREYFGETNQQLADKVTISLANGLTPLFCCGETLAQREAGIHINFVNAQLTESLFHLSPEDFKKVVIAYEPIWAIGTGVTASDEQAQEMHAKIREHLASKYGAAVADEISILYGGSMKPDNAKGLLACKDIDGGLIGGASLKSRDFIDIAKS 250          
The following BLAST results are available for this feature:
BLAST of FC925044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_METCA9.194e-4443.78Triosephosphate isomerase OS=Methylococcus capsula... [more]
TPIS_ENT381.201e-4343.72Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_LEGPH1.568e-4342.51Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPC1.568e-4342.51Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_JANMA1.568e-4342.63Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_VIBSA2.048e-4342.57Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_THICR2.048e-4342.63Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_PSEE42.675e-4342.23Triosephosphate isomerase OS=Pseudomonas entomophi... [more]
TPIS_LEGPL2.675e-4342.51Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_CYTH32.675e-4341.77Triosephosphate isomerase OS=Cytophaga hutchinsoni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB15FM1 TF Citrus clementina cDNA clone KN0AAP8YB15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925044 ID=FC925044; Name=FC925044; organism=Citrus clementina; type=EST; length=788bp
TAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAA
GTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGA
AAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTC
GTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAG
TTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGA
AGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTG
GATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAA
TGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAG
GTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCA
GGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCG
AGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTA
TTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAGTACATTTT
GAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGC
AACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAAT
TGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTG
AACCCGGAGTTCATTGACATCATCAAATCTGCTGAGCT
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