FC925044

Overview
NameFC925044
Unique NameFC925044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SALG2 (Triosephosphate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 106/247 (42.91%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++V+ L + +                ++ L K ++      + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 106/247 (42.91%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++V+ L + +                ++ L K ++      + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 106/247 (42.91%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++V+ L + +                ++ L K ++      + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 106/247 (42.91%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++V+ L + +                ++ L K ++      + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 106/247 (42.91%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++V+ L + +                ++ L K ++      + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 101/251 (40.24%), Postives = 141/251 (56.18%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            M R+  + GNWK N   E    +   + +                    G+  + +     + AQN +  + GAFTGE++A ML ++   +VILGHSERR ++ E++  V  K+  AL+  L  I CVGETLEQREA  T  V+  Q +   + +     +NIV+AYEPVWAIGTGK A+  QA+ VH  +R+ L    S E+A   RI YGGSV   N +EL +QP++DG LVGG+SL   +F  IIK+A
Sbjct:    1 MSRRILIAGNWKMNMRAESGASLAKGIVDAVGKSPAVEVVLCPPSVYLSGVADAVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGETLEQREADDTESVIETQIRGSLEGLDEARAANIVIAYEPVWAIGTGKTASKEQAEAVHAFIRELLGKMFSTEVAEQIRIQYGGSVKPGNAEELLSQPNIDGALVGGSSLKVDDFAGIIKAA 251          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPF (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 109/251 (43.43%), Postives = 146/251 (58.17%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PDFHVAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK +GT   V ++++ L                    ++  V   L+     V AQN  V+   GA TGEI+   LV+     V++GHSERR I+ E +  +  K A A + GL  + CVGETLEQREAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R+ L A  S E+A   R++YGGSV  AN  EL   PD+DG L+GGASLN  EF  I ++A
Sbjct:    2 RRPMVAGNWKMHGTRASVAELINGLRH--LALPSGVDVAVFPPCLYINQVIDGLKGKSISVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRQIMGERDGMLNRKFAAAQACGLIPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHKAIREQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 111/251 (44.22%), Postives = 144/251 (57.37%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK +GT   V +++  L   Q                F+  V   L      V AQN  V+   GA TGE +   L ++    V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+P QAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASLN  EF  I ++A
Sbjct:    2 RRPLVAGNWKMHGTHSSVAELIKGLR--QLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 111/251 (44.22%), Postives = 144/251 (57.37%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK +GT   V +++  L   Q                F+  V   L      V AQN  V+   GA TGE +   L ++    V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+P QAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASLN  EF  I ++A
Sbjct:    2 RRPLVAGNWKMHGTHSSVAELIKGLR--QLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 111/251 (44.22%), Postives = 144/251 (57.37%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK +GT   V +++  L   Q                F+  V   L      V AQN  V+   GA TGE +   L ++    V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+P QAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASLN  EF  I ++A
Sbjct:    2 RRPLVAGNWKMHGTHSSVAELIKGLR--QLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
The following BLAST results are available for this feature:
BLAST of FC925044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SALG25.960e-4342.91Triosephosphate isomerase OS=Salmonella gallinarum... [more]
TPIS_SALEP5.960e-4342.91Triosephosphate isomerase OS=Salmonella enteritidi... [more]
TPIS_SALDC5.960e-4342.91Triosephosphate isomerase OS=Salmonella dublin (st... [more]
TPIS_SALCH5.960e-4342.91Triosephosphate isomerase OS=Salmonella choleraesu... [more]
TPIS_SALA45.960e-4342.91Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_RHOBA5.960e-4340.24Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_PSEPF5.960e-4343.43Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PSEAE5.960e-4344.22Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEAB5.960e-4344.22Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA85.960e-4344.22Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB15FM1 TF Citrus clementina cDNA clone KN0AAP8YB15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925044 ID=FC925044; Name=FC925044; organism=Citrus clementina; type=EST; length=788bp
TAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAA
GTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGA
AAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTC
GTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAG
TTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGA
AGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTG
GATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAA
TGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAG
GTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCA
GGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCG
AGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTA
TTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAGTACATTTT
GAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGC
AACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAAT
TGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTG
AACCCGGAGTTCATTGACATCATCAAATCTGCTGAGCT
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