FC925044

Overview
NameFC925044
Unique NameFC925044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA7 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 112/251 (44.62%), Postives = 143/251 (56.97%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK +GT   V  ++  L   Q                F+  V   L      V AQN  V+   GA TGEI+   L +     V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+P QAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASLN  EF  I ++A
Sbjct:    2 RRPLVAGNWKMHGTHSSVADLIKGLR--QLALPSGVDVAVMPPCLFISQVVQGLAGKAIGVGAQNSAVEPMQGALTGEIAPSQLADAGCGMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_HAES1 (Triosephosphate isomerase OS=Haemophilus somnus (strain 129Pt) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.960e-43
Identity = 103/251 (41.04%), Postives = 140/251 (55.78%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSA 783
            M R+  V GNWK NG+    K++++ L +                        + +  D  +  QN  + K GAFTG+IS EML +  + +VI+GHSERR   +ES+EF+  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL    F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELITGLKDELNAVSGCDVAIAPPVMYLAEAETALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVMNTLGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHI-AKQSQAVAERVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKASAFAVIVKAA 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.783e-43
Identity = 101/246 (41.06%), Postives = 135/246 (54.88%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LNPEFIDIIKSAE 786
            V GNWK NGT E V  ++  +                       +          + AQ+      GAFTGE S  M+      + ++GHSERR   NE++  V  K     + GL  + C+GETLE+RE   T +VV  Q KA+ D   + +  N V+AYEPVWAIGTGKVA+  QAQ+VH  +R WL A  S  +AA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A+
Sbjct:    6 VMGNWKLNGTKESVSALIKGIEAAADAAKNVEVAVCPPTIFIEQVANLVANNSIELGAQDVSTNISGAFTGETSPVMVKEFGAKYSLVGHSERRQYHNETDAVVAAKFVAIQANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWL-AEQSKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGAK 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.783e-43
Identity = 102/251 (40.64%), Postives = 140/251 (55.78%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSA 783
            M R+  V GNWK NG+    K++++ L +                        + +  D  +  QN  + K GAFTG+IS EML +  + +VI+GHSERR   +ES+EF+  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGS+N AN  EL  QPD+DG LVGGASL    F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELITGLKDELNAVSGCDVAIAPPVMYLAEAEAALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVMNTLGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHI-AKQSQAVAERVIIQYGGSINDANAAELFTQPDIDGALVGGASLKASAFAVIVKAA 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_ACTPJ (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tpiA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.328e-42
Identity = 108/254 (42.52%), Postives = 144/254 (56.69%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSAE 786
            M R+  V GNWK NG+    K++++ L + +                +L   +++L     +A  AQN  V   GAFTG+IS EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL  P F  I+K+AE
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP7 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=tpiA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.328e-42
Identity = 108/254 (42.52%), Postives = 144/254 (56.69%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSAE 786
            M R+  V GNWK NG+    K++++ L + +                +L   +++L     +A  AQN  V   GAFTG+IS EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL  P F  I+K+AE
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP2 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.328e-42
Identity = 108/254 (42.52%), Postives = 144/254 (56.69%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSAE 786
            M R+  V GNWK NG+    K++++ L + +                +L   +++L     +A  AQN  V   GAFTG+IS EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL  P F  I+K+AE
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.734e-42
Identity = 105/247 (42.51%), Postives = 141/247 (57.09%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVK-SSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++V+ L + +                ++ L K ++      + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q   +      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRK-ELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDTVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_MARAV (Triosephosphate isomerase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.734e-42
Identity = 104/250 (41.60%), Postives = 137/250 (54.80%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKS 780
            R+  V GNWK NG+ + VK++V  + E                  +L  V           AQN    + GA+TGEISAEM  ++   +V++GHSERR +  E++     KV   L  GL  + CVGETL +REA     VVA Q ++    +AD    WS +V+AYEPVWAIGTGK AT   AQ +H E+RK L    +P  A    ++YGGSV   N   L A+PD+DG L+GGASL   EFI I +S
Sbjct:    2 RRRIVAGNWKMNGSKDLVKQLVGAVREQSGSVGEDVEVVIIPPAIYLDQVAEQGGGRITTGAQNVSQWQSGAYTGEISAEMARDMGCGYVLVGHSERRQLFGETDSVAAAKVEQVLLSGLVAVLCVGETLAEREADQAEAVVAEQVRSGLSVVAD--GQWSRVVVAYEPVWAIGTGKTATADDAQAMHSEIRKVLDGMNAP--ANEISVLYGGSVKADNAAALFAEPDIDGGLIGGASLKAEEFISICRS 247          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.734e-42
Identity = 102/249 (40.96%), Postives = 147/249 (59.04%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR---PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDII 774
            RK  V GNWK +    + +++   LNE                  F+ L  ++ +       V+AQN    +GGAFTGEISA+ML ++ +  VILGHSERR I +E++  + +KV  AL   + VI C GE L+ R++G+  ++V  Q +     ++  SWS IVLAYEPVWAIGTG+ A+P QAQE+H  +R+ +      EIA    I+YGGSV   N KE+ ++PDVDG L+GGA+L   +F+ I+
Sbjct:    2 RKSIVAGNWKMHKNAAQTEEL---LNELIAKIPAKTNAQVIVAPTFVNLQAAAAKLKNTTIGVSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAKEIFSKPDVDGGLIGGAALKADDFLAIV 247          
The following BLAST results are available for this feature:
BLAST of FC925044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEA75.960e-4344.62Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_HAES15.960e-4341.04Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_PSYIN7.783e-4341.06Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_HAES27.783e-4340.64Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_ACTPJ1.328e-4242.52Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP71.328e-4242.52Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP21.328e-4242.52Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_SALTI1.734e-4242.51Triosephosphate isomerase OS=Salmonella typhi GN=t... [more]
TPIS_MARAV1.734e-4241.60Triosephosphate isomerase OS=Marinobacter aquaeole... [more]
TPIS_FLAJ11.734e-4240.96Triosephosphate isomerase OS=Flavobacterium johnso... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB15FM1 TF Citrus clementina cDNA clone KN0AAP8YB15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925044 ID=FC925044; Name=FC925044; organism=Citrus clementina; type=EST; length=788bp
TAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAA
GTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGA
AAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTC
GTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAG
TTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGA
AGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTG
GATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAA
TGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAG
GTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCA
GGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCG
AGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTA
TTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAGTACATTTT
GAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGC
AACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAAT
TGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTG
AACCCGGAGTTCATTGACATCATCAAATCTGCTGAGCT
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