FC925044

Overview
NameFC925044
Unique NameFC925044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTR (Triosephosphate isomerase OS=Chlamydia trachomatis GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.734e-42
Identity = 100/260 (38.46%), Postives = 142/260 (54.62%), Query Frame = 1
Query:   13 HNTHTHSSKMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            H  H+  SK     FV GNWK N T  E +  +                        L   + ++      + AQ       GAFTGEISA ML ++ + +V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T D++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGSV   N + L+  PDV+G LVGGASL+ E F+ II+  +
Sbjct:   17 HLLHSEPSKQ----FVFGNWKMNKTLTEAQTFLKSFISSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTTGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQID 272          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PELPB (Triosephosphate isomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 102/251 (40.64%), Postives = 141/251 (56.18%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            R+  V GNWK N +  E       +++ L EG                    ++  S   +  + AQNC  +  GAFTGE+SA M++ +    VI+GHSERR    E+N  V  ++  ALS+GL VI CVGETL +RE+G    V+++Q +   D +   S IV+AYEPVWAIGTGK A+  QA+EVH  +R  +        +   RI YGGSV  +N  EL A P++DG L+GGASLN  +F  I+K+A
Sbjct:    2 RRKIVVGNWKMNNSVAESVQLATDVLAALGEGFSGCEVGIAPTYLALDATEKVIAES---EVQLVAQNCHYENDGAFTGEVSARMILAVGCSSVIIGHSERRQYFGETNATVNLRIKKALSEGLNVILCVGETLAERESGVMETVISSQVREGLDGIIDISAIVIAYEPVWAIGTGKTASSAQAEEVHLFIRTLVTGLYGQTASEKVRIQYGGSVKPSNAAELFAMPNIDGGLIGGASLNADDFAAIVKAA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LACH4 (Triosephosphate isomerase OS=Lactobacillus helveticus (strain DPC 4571) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 97/242 (40.08%), Postives = 138/242 (57.02%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            M R   + GNWK +   E+  + V  + +                     L K++   + H+ A+NC+ +  GA+TGE S ++L  + I +VI+GHSERR   +E++E +  K     + GLK I C GE+LE REA    D V  Q KA  D +++   SN+V+AYEP+WAIGTGK A+  QA+E+   +R+ +    + E A   RI YGGSV  AN KEL ++PD+DG LVGGASL PE
Sbjct:    1 MSRTPIIAGNWKLHMNPEQTAEFVDAVKDKLPDPSKVESLICAPAVDLDALRKAAKGSNLHIGAENCYFEDEGAYTGETSPKVLKEMGIDYVIIGHSERRGYFHETDEDINKKAKAIFANGLKPIICCGESLETREANKQEDWVVGQIKAALDGLTAEQVSNLVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMSKPDIDGGLVGGASLKPE 242          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIG (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittGG) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 106/260 (40.77%), Postives = 145/260 (55.77%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL---------RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            M R+  V GNWK NG+    K+++  L + +                +LG  +++L         +    + AQN  +   GAFTG+IS+EML +    ++I+GHSERR    ES+EFV  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL  P F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIEGL-KAELHDVTGCDVAIAPPVMYLGTAEAALSGCGCSCGGKSVIQLGAQNVDINVKGAFTGDISSEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 106/260 (40.77%), Postives = 145/260 (55.77%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL---------RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            M R+  V GNWK NG+    K+++  L + +                +LG  +++L         +    + AQN  +   GAFTG+IS+EML +    ++I+GHSERR    ES+EFV  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL  P F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIEGL-KAELHDVTGCDVAIAPPVMYLGTAEAALSGCGCSCGGKSVIQLGAQNVDINVKGAFTGDISSEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_COREF (Triosephosphate isomerase OS=Corynebacterium efficiens GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 103/248 (41.53%), Postives = 139/248 (56.05%), Query Frame = 1
Query:   34 SKMGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            S M RK  + GNWK N   ++    V+K+   L++                   +  +    +      AQ+    + GA+TGE+SA ML  L+  WV++GHSERR   NE++E V  K   ALS+G+  I CVGE LE REAG+ +D V  QT+A    +S+   +N V+AYEPVWAIGTGKVA+   AQEV   +R  +      E+A   RI+YGGSV      E+ +QPDVDG LVGGASL+ E
Sbjct:    2 SPMARKPLIAGNWKMNLDHQQAIGTVQKLAFALHKDYYEKVDVAVIVPFTDLRSVQTLVEGDKLQITYGAQDVSQHESGAYTGEVSASMLAKLNCSWVVVGHSERREYHNETDELVAAKAKAALSKGISPIVCVGEPLEIREAGTHVDYVVEQTRASLAGLSADELANTVIAYEPVWAIGTGKVASAADAQEVCKAIRGLVTELAGEEVAEGMRILYGGSVKAETIAEIVSQPDVDGGLVGGASLDGE 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 105/242 (43.39%), Postives = 134/242 (55.37%), Query Frame = 1
Query:   64 GNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            GNWK N T  E   + + + E                   L  V   +      + AQNC  +  G FTGE+S  ML      +VILGHSERR +  E+N  V  KV  AL++GL VI CVGETL++RE G T  +V AQ       V+  S +V+AYEPVWAIGTGK AT  QAQEVH  +R  +      + A   RI YGGSV  +N  EL A PD+DG L+GGASLN  +F+ I+++A
Sbjct:    3 GNWKMNNTIAESVDLATAIAEKVGADGVQCEVGIAPTFPALYEVCKVIEWSGIRLCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGETLDERERGVTGQIVTAQVVEGLIDVTDISKLVIAYEPVWAIGTGKTATKEQAQEVHALIRAKVTELYGQKAADHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLNADDFMAIVEAA 244          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTB (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 100/260 (38.46%), Postives = 142/260 (54.62%), Query Frame = 1
Query:   13 HNTHTHSSKMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            H  H+  SK     FV GNWK N T  E +  +                        L   + ++      + AQ       GAFTGEISA ML ++ + +V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T D++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGSV   N + L+  PDV+G LVGGASL+ E F+ II+  +
Sbjct:   17 HLLHSEPSKQ----FVFGNWKMNKTLTEAQTFLKSFLSSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQID 272          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT2 (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 100/260 (38.46%), Postives = 142/260 (54.62%), Query Frame = 1
Query:   13 HNTHTHSSKMGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            H  H+  SK     FV GNWK N T  E +  +                        L   + ++      + AQ       GAFTGEISA ML ++ + +V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T D++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGSV   N + L+  PDV+G LVGGASL+ E F+ II+  +
Sbjct:   17 HLLHSEPSKQ----FVFGNWKMNKTLTEAQTFLKSFLSSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQID 272          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 103/242 (42.56%), Postives = 130/242 (53.72%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDII 774
            + GNWK   T  E   +V  L  G                    +          + AQN + +  GAFTGE+S  MLV++   +VI+GHSERR    ES+ FV  K+  AL+ GL+ I CVGE+  QR+AG    +V AQ +A    V     +N+V+AYEP+WAIGTG  ATP  AQ +H  +R  L      EIAA  RI YGGSV   N  EL AQPD+DG LVGGASL    F+ II
Sbjct:    6 IAGNWKMYKTVGEATTLVRDLLAGLGELSDREAIVCPPFTALAAVAALVADSPLGLGAQNLYPEAQGAFTGEVSPPMLVDIGCRYVIIGHSERRQYFGESDAFVNRKLRAALAHGLRPIVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSVKPDNIDELMAQPDIDGALVGGASLQAASFLRII 247          
The following BLAST results are available for this feature:
BLAST of FC925044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLTR1.734e-4238.46Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_PELPB2.265e-4240.64Triosephosphate isomerase OS=Pelodictyon phaeoclat... [more]
TPIS_LACH42.265e-4240.08Triosephosphate isomerase OS=Lactobacillus helveti... [more]
TPIS_HAEIG2.265e-4240.77Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEI82.265e-4240.77Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_COREF2.265e-4241.53Triosephosphate isomerase OS=Corynebacterium effic... [more]
TPIS_CHLTE2.265e-4243.39Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_CHLTB2.265e-4238.46Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLT22.265e-4238.46Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLAA2.265e-4242.56Triosephosphate isomerase OS=Chloroflexus aurantia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YB15FM1 TF Citrus clementina cDNA clone KN0AAP8YB15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925044 ID=FC925044; Name=FC925044; organism=Citrus clementina; type=EST; length=788bp
TAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAA
GTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGA
AAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTC
GTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAG
TTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGA
AGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTG
GATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAA
TGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAG
GTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCA
GGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCG
AGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTA
TTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAGTACATTTT
GAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGC
AACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAAT
TGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTG
AACCCGGAGTTCATTGACATCATCAAATCTGCTGAGCT
back to top