FC925044

Overview
NameFC925044
Unique NameFC925044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.265e-42
Identity = 108/249 (43.37%), Postives = 138/249 (55.42%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWS-NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSA 783
            RK F+ GNWK   T  E    V  L +                     + ++    +  + AQN   +K GAFTGE+S  ML ++ + +VILGHSERR    E++E +  K+  A + GL  I CVGETLE+RE G T  VV  Q  K +A   +  + N+ +AYEPVWAIGTGK ATP  AQEV   +R+ L      EIA   RI YGGSV   N KEL A+PD+DG LVGGASL  E F  I+K +
Sbjct:    2 RKPFIAGNWKMYKTPVEAAGFVRELIDSLKDVSGVDVAVCPPFPALWPVKEALEGSNIALGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAAFTWGLNPIFCVGETLEERERGITKAVVEIQVLKGLAGVTAEQAENLTIAYEPVWAIGTGKTATPDDAQEVCQFIRELLVKLFGREIADKVRIQYGGSVKPENIKELIAKPDIDGALVGGASLKVESFTAIVKGS 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PELLD (Triosephosphate isomerase OS=Pelodictyon luteolum (strain DSM 273) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 102/247 (41.30%), Postives = 139/247 (56.28%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKS 780
            R+  V GNWK N T  E   + + +                     L  V  +L      + AQNC  +  GA+TGE+S  ML  +   +VI+GHSERR    E++E V  ++   L+ G+KVI CVGETL +RE G T  VV+ Q       V+  +++V+AYEPVWAIGTGK A+  QAQEVH  +R  +      E++ A RI YGGSV  +N +EL A PD+DG L+GGASLN  +F  I+K+
Sbjct:    2 RRKIVVGNWKMNKTVAESTALATAVIAALGDGCSACEAGIAPTYPALDAVGRALEGSGIALVAQNCHYEDDGAYTGEVSTGMLKAVGCSYVIIGHSERRQYFGETDETVNLRIKKVLASGMKVILCVGETLAEREEGVTGTVVSRQVTEGLKGVADITDLVIAYEPVWAIGTGKTASSDQAQEVHRLIRDTVKGMYGAEVSEAVRIQYGGSVKASNAEELFAMPDIDGGLIGGASLNAADFAAIVKA 248          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LACPL (Triosephosphate isomerase OS=Lactobacillus plantarum GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 99/245 (40.41%), Postives = 139/245 (56.73%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-----ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDII 774
            + GNWK N T  E    V+ + +                     +V+++   D  +AA+N + +  GAFTGE S   L +L + +V++GHSERR   +E++E +  K       G+K I C GE+LEQREAG     V+ Q KA      AD+VSS   +V+AYEP+WAIGTGK AT  QA+E+   +RK +    S E+A   RI YGGSV  AN  EL  + D+DG LVGGASL P+ F++++
Sbjct:    6 IAGNWKMNKTASEALAFVNAVKDQLPDPSKVESVVAAPALFLQEMVEAAKGSDLKIAAENAYFEDAGAFTGETSPAALADLGVDYVVIGHSERRGYFHETDEDINKKAHAIFKNGMKPIICCGESLEQREAGEAESWVSGQIKAALKDLSADQVSS---LVIAYEPIWAIGTGKTATSDQAEEICAVVRKTVADLYSQEVADKVRIQYGGSVKPANVNELMGKDDIDGGLVGGASLQPDSFLELV 247          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIN (Triosephosphate isomerase OS=Haemophilus influenzae GN=tpiA PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 106/260 (40.77%), Postives = 144/260 (55.38%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL---------RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            M R+  V GNWK NG+    K+++  L + +                +LG  +++L         +    + AQN  +   GAFTG+IS EML +    ++I+GHSERR    ES+EFV  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL  P F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIEGL-KAELHDVTGCDVAIAPPVMYLGTAEAALSGCGCSCGGKSVIQLGAQNVDINVKGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIE (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittEE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 106/260 (40.77%), Postives = 144/260 (55.38%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL---------RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSA 783
            M R+  V GNWK NG+    K+++  L + +                +LG  +++L         +    + AQN  +   GAFTG+IS EML +    ++I+GHSERR    ES+EFV  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASL  P F  I+K+A
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIEGL-KAELHDVTGCDVAIAPPVMYLGTAEAALSGCGCNCGGKSVIQLGAQNVDINVKGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_BACHD (Triosephosphate isomerase OS=Bacillus halodurans GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 104/250 (41.60%), Postives = 138/250 (55.20%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWSNI-VLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            RK  + GNWK N T  E K  V  +                      GLV+ +   +  + AQN   ++ GAFTGEIS   L ++ + +VILGHSERR +  E++E V  K   A + GL  I CVGETLE+REA  T DVV  Q  K +         + V+AYEPVWAIGTGK ++   A +V   +RK +    S E A A RI YGGSV  AN  E  AQ D+DG LVGGASL+P+ F+ ++++ +
Sbjct:    2 RKPIIAGNWKMNKTVGEAKAFVEEVKGAIPSSDKVDSVVCSPALFLEGLVQKAEGTELRIGAQNMHFEESGAFTGEISPVALSDMKVDYVILGHSERRDMFAETDELVNKKTHAAFAHGLTPIVCVGETLEEREANQTYDVVKTQVEKGLEGLTDEQVKVTVIAYEPVWAIGTGKSSSAEDANDVCSYIRKVVTEKFSQEAADAVRIQYGGSVKPANIAEYMAQSDIDGALVGGASLDPQSFLQLLEAVK 251          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PHOLL (Triosephosphate isomerase OS=Photorhabdus luminescens subsp. laumondii GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.863e-42
Identity = 106/246 (43.09%), Postives = 140/246 (56.91%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSA 783
            V GNWK NG+T  V ++++ L + +                +L   K +L      + AQ+  V   GAFTGE SA ML ++   ++I+GHSERR    ES+EF+  K A    QGL  + C+GET ++ EAG T  V A Q  A+ +   V+++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A     IA    I YGGSVN  N  EL +QPD+DG LVGGASL    F  I+K+A
Sbjct:    6 VMGNWKLNGSTHMVNELITGLRQ-ELSSVTGCDVAIAPPALYLSQAKQALAGSRIALGAQDVDVNLSGAFTGETSATMLKDIGAEYIIIGHSERRTYHQESDEFIAKKFAILKQQGLIPVLCIGETEQENEAGQTESVCARQIDAVLNTLGVAAFQGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AQKDAAIAQQIIIQYGGSVNADNAAELFSQPDIDGALVGGASLKANAFAVIVKAA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.863e-42
Identity = 100/248 (40.32%), Postives = 138/248 (55.65%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKS 780
            R+  + GNWK     +E  + ++ L +                      VK     +  +AA+N + K  GA+TGE+S +ML ++ + +VILGHSERR    ES+EF+  KV   L  G+K I C+GE LE RE G T++V+A Q K  + D         ++AYEPVWAIGTGK ATP  AQE H E+R  L      ++A    I YGGS+   N K+L +Q D+DG LVGGASL  + F +IIK+
Sbjct:    2 RRLVIAGNWKMYKNNKEAVETLTQLKDLTRDVKNVDIVIGAPFTCLSDAVKIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIRNVLAEMFGKDVADKMIIQYGGSMKPENAKDLLSQEDIDGGLVGGASLKADSFFEIIKA 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SHISS (Triosephosphate isomerase OS=Shigella sonnei (strain Ss046) GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.045e-42
Identity = 105/247 (42.51%), Postives = 138/247 (55.87%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++VS L + +                ++ + K         + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A     IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRK-ELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SHIFL (Triosephosphate isomerase OS=Shigella flexneri GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.045e-42
Identity = 105/247 (42.51%), Postives = 138/247 (55.87%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDIIKSAE 786
            V GNWK NG+   V ++VS L + +                ++ + K         + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A     IA    I YGGSVN +N  EL AQPD+DG LVGGASL  + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRK-ELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250          
The following BLAST results are available for this feature:
BLAST of FC925044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CARHZ2.265e-4243.37Triosephosphate isomerase OS=Carboxydothermus hydr... [more]
TPIS_PELLD2.958e-4241.30Triosephosphate isomerase OS=Pelodictyon luteolum ... [more]
TPIS_LACPL2.958e-4240.41Triosephosphate isomerase OS=Lactobacillus plantar... [more]
TPIS_HAEIN2.958e-4240.77Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIE2.958e-4240.77Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_BACHD2.958e-4241.60Triosephosphate isomerase OS=Bacillus halodurans G... [more]
TPIS_PHOLL3.863e-4243.09Triosephosphate isomerase OS=Photorhabdus luminesc... [more]
TPIS_FUSNN3.863e-4240.32Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_SHISS5.045e-4242.51Triosephosphate isomerase OS=Shigella sonnei (stra... [more]
TPIS_SHIFL5.045e-4242.51Triosephosphate isomerase OS=Shigella flexneri GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB15FM1 TF Citrus clementina cDNA clone KN0AAP8YB15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925044 ID=FC925044; Name=FC925044; organism=Citrus clementina; type=EST; length=788bp
TAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAA
GTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGA
AAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTC
GTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAG
TTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGA
AGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTG
GATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAA
TGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAG
GTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCA
GGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCG
AGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTA
TTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAGTACATTTT
GAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGC
AACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAAT
TGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTG
AACCCGGAGTTCATTGACATCATCAAATCTGCTGAGCT
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