FC925044

Overview
NameFC925044
Unique NameFC925044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_STRMU (Triosephosphate isomerase OS=Streptococcus mutans GN=tpiA PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.019e-34
Identity = 91/252 (36.11%), Postives = 128/252 (50.79%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE----FIDIIK 777
            M RK  + GNWK N T  E ++ +  +                      G+ K     +  VAAQNC+ +  GAFTGE S   L  L + +VI+GHSERR   +E+++ +  K        +  I C GE+LE  EAG T + +  Q  A    +S+   S++V+AYEP+WAIGTGK A    A ++   +R  +      E+A A RI YGGSV   N  E  A+ +VDG LVGGASL  +     +D +K
Sbjct:    1 MSRKPIIAGNWKMNKTAAEAREFIDAVKNNIPSNNLVDTVIGSPALFLEGMKKGVKGTELQVAAQNCYWEDFGAFTGETSPAALAALGVDYVIIGHSERRDYFHETDQEINKKAHAIFKHKMTPILCCGESLETYEAGKTAEWIEGQITADLKGLSAEQVSSMVIAYEPIWAIGTGKSADANIADDICGVVRATVEKLYGKEVAQAVRIQYGGSVKPENVAEYMAKENVDGALVGGASLQADSFLALLDFVK 252          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA9 (Triosephosphate isomerase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.019e-34
Identity = 94/249 (37.75%), Postives = 127/249 (51.00%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS-----NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+  V   GA+TGE+S   L  L + +V++GHSERR    E +  V  K A AL  GL  I C+GE L+ REAG   D V     ++   ++  S      +V+AYEPVWAIGTG+VA+   AQEV   +R  L    + ++A + R++YGGS N  N  E+ AQ DVDG LVGGASL+ E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDIRSVQTLVDGDKLRLTYGAQDLSVYDSGAYTGEVSGAFLAKLGVTYVVVGHSERRQYHGEDDALVAAKAAAALKHGLTPIVCIGEALDIREAG---DHVQYNVNSLRGSLAGLSAEQVGKVVIAYEPVWAIGTGRVASAADAQEVCAAIRAELAQIANADVAGSVRVLYGGSANAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CUPTR (Triosephosphate isomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.019e-34
Identity = 85/179 (47.49%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  229 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            AQ+   +  GAFTGE++A ML      +V++GHSERR    E+++ V  K   AL  G+  + CVGETL QREAG T  VV  Q +A+ +   V     +VLAYEPVWAIGTGK AT  QAQ VH  LR  + A  +  +A    I+YGGSV   N  EL +  D+DG L+GGASL  E
Sbjct:   62 AQDVSAEARGAFTGEVAASMLGEFGCTYVLVGHSERRTYHGETDQAVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLEALTVEQLGRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAARDA-GVAGRMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLKSE 239          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_STRCO (Triosephosphate isomerase OS=Streptomyces coelicolor GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 88/186 (47.31%), Postives = 114/186 (61.29%), Query Frame = 1
Query:  229 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IADRVSSWS-NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-NPEFIDIIK 777
            AQ+     GGA+TGEIS  ML  L   +V +GHSERR    E++E V  KV  A   GL  I CVGE L+ REAG+ ++   AQ +  + D  +  + ++V+AYEPVWAIGTGKV     AQEV   +R  L    S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL + EF+ I++
Sbjct:   69 AQDISAHDGGAYTGEISGPMLAKLKCTYVAVGHSERRQYHAETDEIVNAKVKAAYKHGLTPILCVGEELDVREAGNHVEHTLAQVEGGLKDLAAEQAESVVIAYEPVWAIGTGKVCGADDAQEVCAAIRGKLAELYSQELADKVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDSDEFVKIVR 254          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 91/242 (37.60%), Postives = 124/242 (51.24%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLV-KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIK 777
            + GNWK NG      +  ++L                      G   K+       V AQ+C  K  GA TG++SAEML +     +I+GHSERR    ES+  V  K       GL  I CVGET +QR+AG T+D++  Q      + S+ +N+ +AYEPVWAIGTG   T    +++H  +R  L    + E  A  RI+YGGSV  +N  EL A  +V+G LVGGASL   +F+ I K
Sbjct:    9 IAGNWKMNGLKASTAEFEAMLAGAAEVTGKADLLVCPPATLLAGFADKARGTRAVAVGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_SACEN (Triosephosphate isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.738e-34
Identity = 100/247 (40.49%), Postives = 126/247 (51.01%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN 753
            M R+  + GNWK N    E    V+KI   L E                   +  +    +      AQ+    + GA+TGE+S  ML  L   +V++GHSERR    E++E V  KV   L  G+  I CVGE LE REAG     ST  ++ A      +++     +V+AYEPVWAIGTGKVAT   AQEV   LR  L      EIA   R++YGGSV  +N  EL  Q DVDG LVGGASLN
Sbjct:    1 MARQPLIAGNWKMNLNHLEAIALVQKIAFSLPEKYFAKVEVAVIPPFTDIRSVQTLIDGDKLLLKHGAQDVSEHESGAYTGEVSGPMLAKLGCSYVVVGHSERREHHAETDEVVNRKVRAVLKHGMSPILCVGEPLEVREAGGHVEHSTTQLINALKGLKTEQIRQ---VVVAYEPVWAIGTGKVATAADAQEVCAALRTALADKYGKEIADEVRVLYGGSVKSSNIGELIGQNDVDGALVGGASLN 244          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.738e-34
Identity = 90/245 (36.73%), Postives = 126/245 (51.43%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            M RK  + GNWK N T  E +  V  +                       +       +  +AA+N + +  GAFTGE S   +V+L I ++I+GHSERR   +E++E +  K     + G   I C GETLE  EAG T + V+ Q +A      A++V   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGSV     + L A+ ++DG LVGGASL  +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQV---SNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEAD 242          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LACLA (Triosephosphate isomerase OS=Lactococcus lactis subsp. lactis GN=tpiA PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.738e-34
Identity = 88/242 (36.36%), Postives = 125/242 (51.65%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            M RK  + GNWK N T  E +  V  +                       +       +  +AA+N + +  GAFTGE S   +V+L + ++I+GHSERR   +E++E +  K     + G   I C GETLE  EAG T + V+ Q +A    +S+   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGSV     + L A+ ++DG LVGGASL  +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLSAEQVSNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEAD 242          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.738e-34
Identity = 95/242 (39.26%), Postives = 123/242 (50.83%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            R   + GNWK N T +E  ++V  L                       L  VK S   +  V AQN   ++ GA+TGEI+ +ML  L + +VI+GHSERR   NE++E V  KV  A    L  I C GE+LE+RE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  + A     +A   RI YGGSV     K   A+ ++DG LVGGASL  E
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPLVKDAKCDVVVCPTYVCLPAVLEEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_LACLS (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.270e-34
Identity = 89/245 (36.33%), Postives = 126/245 (51.43%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            M RK  + GNWK N T  E +  V  +                       +       +  +AA+N + +  GAFTGE S   +V+L + ++I+GHSERR   +E++E +  K     + G   I C GETLE  EAG T + V+ Q +A      A++V   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGSV     + L A+ ++DG LVGGASL  +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQV---SNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEAD 242          
The following BLAST results are available for this feature:
BLAST of FC925044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRMU1.019e-3436.11Triosephosphate isomerase OS=Streptococcus mutans ... [more]
TPIS_MYCA91.019e-3437.75Triosephosphate isomerase OS=Mycobacterium abscess... [more]
TPIS_CUPTR1.019e-3447.49Triosephosphate isomerase OS=Cupriavidus taiwanens... [more]
TPIS_STRCO1.331e-3447.31Triosephosphate isomerase OS=Streptomyces coelicol... [more]
TPIS_BRASB1.331e-3437.60Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_SACEN1.738e-3440.49Triosephosphate isomerase OS=Saccharopolyspora ery... [more]
TPIS_LACLM1.738e-3436.73Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_LACLA1.738e-3436.36Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_CLOB11.738e-3439.26Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_LACLS2.270e-3436.33Triosephosphate isomerase OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB15FM1 TF Citrus clementina cDNA clone KN0AAP8YB15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925044 ID=FC925044; Name=FC925044; organism=Citrus clementina; type=EST; length=788bp
TAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAA
GTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGA
AAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTC
GTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAG
TTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGA
AGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTG
GATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAA
TGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAG
GTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCA
GGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCG
AGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTA
TTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAGTACATTTT
GAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGC
AACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAAT
TGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTG
AACCCGGAGTTCATTGACATCATCAAATCTGCTGAGCT
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