FC925044

Overview
NameFC925044
Unique NameFC925044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925044_ssr17 microsatellite FC925044_ssr17:17..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:18..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_MYCLE (Triosephosphate isomerase OS=Mycobacterium leprae GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.057e-34
Identity = 93/244 (38.11%), Postives = 124/244 (50.82%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN 753
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG+IS   L  L   +V++GHSERR   +E +  V  K A AL   L  I C+GE LE RE G  +     Q +     +S     N+V+ YEPVWAIGTG+VA+   AQEV   +RK L A  SP++A   R++YGGS+N  N  ++ AQ DVDG LVGGASL+
Sbjct:    1 MSRKSLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLTYGAQDLSQHDLGAYTGDISGAFLAKLGCSFVLVGHSERRTYHDEGDALVAAKTAAALKNSLTPIVCIGEYLEIREVGEHVSHCQNQLRGSLAGLSPEQIGNVVIVYEPVWAIGTGRVASAADAQEVCEAIRKELGALASPQVAETVRVLYGGSLNAKNIGDIVAQQDVDGGLVGGASLD 244          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIEC (Triosephosphate isomerase 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.057e-34
Identity = 93/246 (37.80%), Postives = 130/246 (52.85%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLN-PEFIDIIKSAE 786
            V GNWK NGT   + +I ++  EG                  L  V ++L  D  +A  AQ+C  K  GA TG+ISAEM+ +    +VI+GHSERR    E++  V  K   A +  L  I C+GET ++R AG  +DV+  Q  A     ++  N V+AYEP+WAIGTG   T    ++ H  +R  L +    E     R++YGGSV  AN  EL    +VDG L+GGASL   +F+ I ++ E
Sbjct:    9 VAGNWKMNGTRASLDQIKAIA-EGVRPPLADKVEALICPPTTLLYVATALCTDSPLAIGAQDCHQKPSGAHTGDISAEMIADSFGTYVIVGHSERRTDHAETDHLVRAKAEAAFAAELTAIICIGETADERRAGQELDVIKRQLSASVPDAATAENTVIAYEPIWAIGTGVTPTSGDVEKAHAFMRAELVSRFGDE-GRKMRLLYGGSVKPANAGELLGIANVDGALIGGASLKAADFLAIYRAYE 252          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.604e-34
Identity = 94/246 (38.21%), Postives = 125/246 (50.81%), Query Frame = 1
Query:   40 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR    E++E V  K   AL  GL  I C+GE LE REAG+ ++      +     +S+   +  V+AYEPVWAIGTG+VA+   AQEV   +R  L    S ++AA  R++YGGSVN  N  E+  Q DVDG LVGGASL+ E
Sbjct:    1 MTRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDRVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQTVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.604e-34
Identity = 94/242 (38.84%), Postives = 122/242 (50.41%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            R   + GNWK N T +E  ++V  L                       L  VK S   +  V AQN   ++ GA+TGEI+ +ML  L + +VI+GHSERR   NE++E V  KV  A    L  I C GE+LE+RE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGSV     K   A+ ++DG LVGGASL  E
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPLVKDAKCDVVVCPTYVCLPAVLEEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.604e-34
Identity = 81/161 (50.31%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  256 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 732
            GA+TGE+SAE+L +  I +V++GHSERR    ES   +  K   AL+ GLKVI CVGE+LEQRE+G    VV  Q   +A  V++  W +IV+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    A   I+YGGSV   N  ELAA PD++G L
Sbjct:   68 GAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGSVKAENAVELAACPDINGAL 226          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.127e-33
Identity = 91/246 (36.99%), Postives = 132/246 (53.66%), Query Frame = 1
Query:   49 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD---FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE-FIDII 774
            K  + GNWK N T  + K+  S  N+                     +  ++   +     +A QN    + GA+TGEISA+ML++L++ + I+GHSERR    E++  V  K   A+   +  + CVGETLE+ EA  T  V+  Q K     V   S +++AYEP+WAIGTGK ATP QAQ+V   +RK    N +        I+YGGSV+  N ++L  Q D++G LVGGASL  + FI ++
Sbjct:    3 KTIIIGNWKMNKTFTQTKEFFSAFNQLYIENKNKINQNLDFAVALPAINVAAFSKNTTKLELAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDV-DLSKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVDSFIKLL 239          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_MYCFL (Triosephosphate isomerase OS=Mycoplasma flocculare GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.127e-33
Identity = 95/247 (38.46%), Postives = 129/247 (52.23%), Query Frame = 1
Query:   49 KFFVGGNWKCNGTTEEVKKIVSVLN----EGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNP-EFIDII 774
            K  + GNWK N T  E +  +   +    +                   L L+ +S      VAAQN      GAFTGEISA+ML +L + +VI+GHSERR I  E  E + +K+  A    L  + CVGE+L + EA  T  V+  Q   +   V ++   ++AYEP+WAIGTGK AT   A++V     K +  N    I    R+IYGGSVN  N  EL  Q ++DG LVG ASL+P EF+ I+
Sbjct:    2 KKIIIGNWKMNKTVHETRDFIQKFDIFYSKNLGKIKDNLDFAIAPSFTSLALISTSKIDKLKVAAQNLSQFDSGAFTGEISAKMLQDLAVHYVIIGHSERREIFKEIGEDLTNKILQAQKYNLIPVFCVGESLSEFEANETEKVIIGQINEVKS-VLNFEKAIIAYEPIWAIGTGKTATAQIAEQV----CKLIKNNFGKNI----RVIYGGSVNSKNINELLLQKNIDGALVGKASLDPEEFVKIL 239          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_ENTFA (Triosephosphate isomerase OS=Enterococcus faecalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.127e-33
Identity = 87/240 (36.25%), Postives = 123/240 (51.25%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLNPE 759
            RK  + GNWK N T  E +     +                       L  +    +  +AAQNC+ +  GAFTGE S   + +L + +VI+GHSERR   +E++E +  K     + G+  I C GETLE  EAG T + +  Q TK +    +   +++V+AYEP+WAIGTGK A    A E+   +R  +      E++ A RI YGGSV   N  E  A+ +VDG LVGGASL  +
Sbjct:    2 RKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVKLAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANGMTPIFCCGETLETYEAGKTAEWIEGQITKGLVGLSNEQVASMVIAYEPIWAIGTGKSADANIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEAD 241          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.471e-33
Identity = 84/245 (34.29%), Postives = 136/245 (55.51%), Query Frame = 1
Query:   58 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-NPEFIDIIKSA 783
            + GNWK      E  + +  +N                    L ++  +  P+  + AQN + +  GAFTGEIS   LV+L + +V+LGHSERR++  E+++ V  K+  AL   L  + C+GETLE +E   T + +  Q T+A+ D        I++AYEPVWAIGTGK A+P +A +   ++R+ +    S ++  + +I+YGGSV+  N + +  Q ++DG LVG ASL   +F++  ++A
Sbjct:   10 IAGNWKMYKDKNEALEFIQKVNFS-IPNSKEVETIIFAQSTLLDVLVQNQGPNLKIGAQNAFHESEGAFTGEISPLNLVSLGVKYVLLGHSERRVLFGETDQLVNLKLLKALQNNLSPVLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLETKDFLNFTQAA 253          
BLAST of FC925044 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.922e-33
Identity = 93/239 (38.91%), Postives = 121/239 (50.63%), Query Frame = 1
Query:   46 RKFFVGGNWKCNGTTEEVKKIVSVLNE--GQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 750
            R   + GNWK N T +E  ++V  L                       L  VK S   +  V AQN   ++ GA+TGEI+ +ML  L + +VI+GHSERR   NE++E V  KV  A    L  I C GE+LE+RE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGSV     K   A+ ++DG LVGGASL
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPLVKDAKCDVVVCPTYVCLPAVLEEVKGS---NIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASL 237          
The following BLAST results are available for this feature:
BLAST of FC925044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCLE5.057e-3438.11Triosephosphate isomerase OS=Mycobacterium leprae ... [more]
TPIS1_RHIEC5.057e-3437.80Triosephosphate isomerase 1 OS=Rhizobium etli (str... [more]
TPIS_MYCGI6.604e-3438.21Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]
TPIS_CLOBL6.604e-3438.84Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS3_RHIEC6.604e-3450.31Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]
TPIS_MYCHR1.127e-3336.99Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_MYCFL1.127e-3338.46Triosephosphate isomerase OS=Mycoplasma flocculare... [more]
TPIS_ENTFA1.127e-3336.25Triosephosphate isomerase OS=Enterococcus faecalis... [more]
TPIS_PHYAS1.471e-3334.29Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS_CLOBK1.922e-3338.91Triosephosphate isomerase OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB15FM1 TF Citrus clementina cDNA clone KN0AAP8YB15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925044 ID=FC925044; Name=FC925044; organism=Citrus clementina; type=EST; length=788bp
TAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAA
GTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGA
AAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTC
GTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAG
TTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGA
AGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTG
GATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAA
TGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAG
GTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCA
GGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCG
AGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTA
TTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAGTACATTTT
GAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGC
AACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAAT
TGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTG
AACCCGGAGTTCATTGACATCATCAAATCTGCTGAGCT
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