FC925051

Overview
NameFC925051
Unique NameFC925051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3761 contig Ccv1_Contig3761:1..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 70/204 (34.31%), Postives = 89/204 (43.63%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L+G   GDYG+D  GL  DP      RE E+IH RWAM   +G    +  A SG+      WF+AGA            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA         PDT     LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--------------------VAGGPLGEVTDPIYPGGSF-DPLGLADD-------PDT--FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 69/204 (33.82%), Postives = 87/204 (42.65%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGA-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 67/204 (32.84%), Postives = 90/204 (44.12%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  +Q++LMG+VE  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK P+
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 211
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 66/204 (32.35%), Postives = 88/204 (43.14%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AG+            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR--------------------VAGGPLGEVEDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 68/205 (33.17%), Postives = 88/205 (42.93%), Query Frame = 2 
Query:  215 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 67/204 (32.84%), Postives = 89/204 (43.63%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG+VE  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK P+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 65/204 (31.86%), Postives = 89/204 (43.63%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AGA            +P  +   S  ++   Q++LMG+VE  R      P  + +                  ++ YPGG  FDPL LA          D +    LKV E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGEGL------------------DKVYPGGA-FDPLGLA---------DDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 65/204 (31.86%), Postives = 89/204 (43.63%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AGA            +P  +   S  ++   Q++LMG+VE  R      P  + +                  ++ YPGG  FDPL LA          D +    LKV E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGEGL------------------DKVYPGGA-FDPLGLA---------DDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 67/205 (32.68%), Postives = 86/205 (41.95%), Query Frame = 2 
Query:  215 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
[Close]
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 68/204 (33.33%), Postives = 87/204 (42.65%), Query Frame = 2 
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A   GK PL
Sbjct:   63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 236
The following BLAST results are available for this feature:
BLAST of FC925051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2_PHYPA1.251e-1434.31Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ1.251e-1433.82Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_SOLLC1.634e-1432.84Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_POLMU1.634e-1432.35Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2A_SPIOL2.134e-1433.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP2.134e-1432.84Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_ORYSJ2.134e-1431.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.134e-1431.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC2.134e-1432.68Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_MAIZE2.134e-1433.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB19FM1 TF Citrus clementina cDNA clone KN0AAP8YB19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925051 ID=FC925051; Name=FC925051; organism=Citrus clementina; type=EST; length=819bp
CAGAAGTCAAGTAGATATCATATCTATGGCGGCTGCAACATCCGGGGCTG
TGTTAAACGGATTGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAG
GCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGT
TGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTG
GTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGAC
TACGGATTCGACCCACTTGGGCTTGGAAAGGACCCAGCATTCCTGAAATG
GTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTG
TTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCT
GGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGG
AACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATT
TTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGTCAAGA
ACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGCTACCCTGGTGG
AAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAATTAAGGATGGTGTCT
ACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAGTTGCTGAGATTAAA
CATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTCTACTTTGAAGCTGG
CCAAGGCAAGACGCCACTTTGGGGCTCTTGGTTTGTAAAACATGCTTATG
TAGATAACTCACTGATTGG
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