FC925051

Overview
NameFC925051
Unique NameFC925051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 67/204 (32.84%), Postives = 87/204 (42.65%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AGA             P  I   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D +    LKV EIK+ RLAM +M  F+ +A   GK P+
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR--------------------VAGGPLGEVTDPIYPGGNF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 252          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 67/204 (32.84%), Postives = 88/204 (43.14%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AG+            +P  +   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYR--------------------VAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 68/204 (33.33%), Postives = 87/204 (42.65%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K  RLAM++M  F+ +A   GK PL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPL 239          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 66/204 (32.35%), Postives = 89/204 (43.63%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG+VE  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK P+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 67/205 (32.68%), Postives = 87/205 (42.44%), Query Frame = 2
Query:  215 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA            E    LKV E+K+ RLAM +M  F+  A   GK PL
Sbjct:   28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLAEV---------PEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPL 202          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 57/184 (30.98%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-----------GQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 736
            P  LDGS PGD+GFDPLGL   P   + ++E+E+ H RWAM  V G+ V            Q W+ +P  +A      +   +  ++L  + L + + E +R ++  +PE +                       YPGG  FDPL          +  D  K + LK+ EIK+ RLAM+A + F
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEKKK----------------------YPGGA-FDPL---------GFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 66/204 (32.35%), Postives = 89/204 (43.63%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  +Q++LMG +E  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK P+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 69/204 (33.82%), Postives = 87/204 (42.65%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  P DYG+D  GL  DP      RE E+IH RWAM   +G    +  A +GI      WF+AGA            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVIDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 66/205 (32.20%), Postives = 85/205 (41.46%), Query Frame = 2
Query:  215 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+ G+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGEPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 66/205 (32.20%), Postives = 85/205 (41.46%), Query Frame = 2
Query:  215 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV  IK+ RLAM +M  F+ +A   GK PL
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
The following BLAST results are available for this feature:
BLAST of FC925051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2A_PINSY3.639e-1432.84Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB27_TOBAC3.639e-1432.84Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_MAIZE3.639e-1433.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC4.753e-1432.35Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_PEA4.753e-1432.68Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB121_HORVU6.208e-1430.98Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB23_TOBAC8.108e-1432.35Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_PETSP8.108e-1433.82Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_NICPL8.108e-1432.20Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_TOBAC1.059e-1332.20Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB19FM1 TF Citrus clementina cDNA clone KN0AAP8YB19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925051 ID=FC925051; Name=FC925051; organism=Citrus clementina; type=EST; length=819bp
CAGAAGTCAAGTAGATATCATATCTATGGCGGCTGCAACATCCGGGGCTG
TGTTAAACGGATTGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAG
GCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGT
TGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTG
GTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGAC
TACGGATTCGACCCACTTGGGCTTGGAAAGGACCCAGCATTCCTGAAATG
GTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTG
TTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCT
GGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGG
AACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATT
TTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGTCAAGA
ACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGCTACCCTGGTGG
AAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAATTAAGGATGGTGTCT
ACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAGTTGCTGAGATTAAA
CATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTCTACTTTGAAGCTGG
CCAAGGCAAGACGCCACTTTGGGGCTCTTGGTTTGTAAAACATGCTTATG
TAGATAACTCACTGATTGG
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