FC925051

Overview
NameFC925051
Unique NameFC925051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3761 contig Ccv1_Contig3761:1..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 66/204 (32.35%), Postives = 87/204 (42.65%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AGA             P  I   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D +    +KV EIK+ RLAM +M  F+ +A   GK P+
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR--------------------VAGGPLGEVTDPIYPGGNF-DPLGLAD---------DPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 252          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 65/204 (31.86%), Postives = 85/204 (41.67%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG +E                      R A        +  YPGG  FDPL LA          D E    +KV E+K+ RLAM +M  F+ +A   GK PL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG--------------------YRVAGGPLGEVVDPLYPGGT-FDPLGLA---------DDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 65/204 (31.86%), Postives = 84/204 (41.18%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH  WAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A   GK PL
Sbjct:    7 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 180          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 66/204 (32.35%), Postives = 88/204 (43.14%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG+VE  R      P  + ++                    YPGG F DPL LA          D +    LKV EIK+ RLAM +M  F+ +A   GK P+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------------YPGGAF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 67/204 (32.84%), Postives = 86/204 (42.16%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      W +AG+            +P  +   S  ++   Q+LLMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E K+ RLAM +M  F+ +A   GK PL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYR--------------------VAGGPLGVVVDPLYPGGSF-DPLGLA---------EDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPL 241          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 66/204 (32.35%), Postives = 84/204 (41.18%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D   L  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 65/204 (31.86%), Postives = 85/204 (41.67%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DPA     R+ E+IH RW M   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    L+V EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVIDPLYPGGS-FDPLGLA---------DDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 62/196 (31.63%), Postives = 83/196 (42.35%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF-------VGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 748
            P +L G  PGDYG+D  GL   P      RE E+IH R AM+A +G         +GQ +    WF+AGA            +P  +   S  ++  T+++LMG VE  R                     A        +  YPG   FD L LA          DTE    LKV E+K+ RLAM +M  F+ +A
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYR--------------------IARGPLGEVTDPLYPGS--FDSLGLA---------EDTEAFAELKVKELKNGRLAMFSMFGFFVQA 234          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 66/204 (32.35%), Postives = 86/204 (42.16%), Query Frame = 2
Query:  218 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA            +    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG--GPLGEIV------------------DPLYPGGS-FDPLGLA---------ERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240          
BLAST of FC925051 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 66/207 (31.88%), Postives = 88/207 (42.51%), Query Frame = 2
Query:  215 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS---GIP------WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 769
            +P    G  PGDYG+D  GL  DP   K YRE ELIH R  +   +G+   +  +   GI       WF+AGA            +P  I   +  + L  Q++LMG VE  R      P  + ++   P                   G+ FDPL LA          D +    LKV EIK+ RLAM A L F+ +A   GK P+
Sbjct:   72 HPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPLYP-------------------GEAFDPLGLA---------DDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPI 248          
The following BLAST results are available for this feature:
BLAST of FC925051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2A_PYRPY1.383e-1332.35Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE1.383e-1331.86Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA1.383e-1331.86Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_GOSHI1.383e-1332.35Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_PETSP1.806e-1332.84Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB25_PETSP3.081e-1332.35Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_PETSP3.081e-1331.86Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_MALDO6.864e-1331.63Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_WHEAT6.864e-1332.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_DUNSA1.997e-1231.88Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB19FM1 TF Citrus clementina cDNA clone KN0AAP8YB19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925051 ID=FC925051; Name=FC925051; organism=Citrus clementina; type=EST; length=819bp
CAGAAGTCAAGTAGATATCATATCTATGGCGGCTGCAACATCCGGGGCTG
TGTTAAACGGATTGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCCAG
GCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTTGT
TGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGGTG
GTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTGAC
TACGGATTCGACCCACTTGGGCTTGGAAAGGACCCAGCATTCCTGAAATG
GTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTG
TTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGGCT
GGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGG
AACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGATT
TTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGTCAAGA
ACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGCTACCCTGGTGG
AAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAATTAAGGATGGTGTCT
ACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAGTTGCTGAGATTAAA
CATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTCTACTTTGAAGCTGG
CCAAGGCAAGACGCCACTTTGGGGCTCTTGGTTTGTAAAACATGCTTATG
TAGATAACTCACTGATTGG
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