FC925058

Overview
NameFC925058
Unique NameFC925058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SEC22_YARLI (Protein transport protein SEC22 OS=Yarrowia lipolytica GN=SEC22 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 86/200 (43.00%), Postives = 138/200 (69.00%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAP 691
            MV  T+I R +DGLPL+  +DDG++  +    K+Q K + + LS   N A R SIE+G YV HY+++  + Y  + + +YP+KLAF YL++L  EF++ +G + ++   RPY F++FDTF+QKTK++YQDTR   N+ KLN EL +V ++MT+N++++L  G  LD +S++SS L +ES+ Y   A+ +N +A+IR++ P
Sbjct:    1 MVLSTLIMRASDGLPLSASVDDGQE--NLSEQKKQCKLVTQKLSA--NSADRASIESGNYVIHYLMKDGIVYYCISESSYPRKLAFSYLDELDREFQKSHGQEALKEGVRPYKFVEFDTFMQKTKRVYQDTRATHNLDKLNTELQDVTRVMTKNIEDLLHRGHSLDHMSDLSSNLRTESKKYRRAAQRINWEAMIRQYIP 196          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SEC22_SCHPO (Protein transport protein sec22 OS=Schizosaccharomyces pombe GN=sec22 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.051e-40
Identity = 81/191 (42.41%), Postives = 128/191 (67.02%), Query Frame = 2
Query:  134 LPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 703
            LPLA  +DD    R+ E +K+Q K + K LS       R SIE+G Y FHY+I+  +CYL +C+++YP+KLAF YLE+L  EF    G + ++   RPYAF++FDTF+QK+K++Y   R   N+ KLN EL +V ++MT+N++++L  G+ L++++++SS L   S  Y   A+ +N +AL R++ PV+I+
Sbjct:    7 LPLAASVDDESTERNLESHKKQAKLILKRLS--PTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNLEALWRQYGPVSII 195          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SEC22_ASHGO (Protein transport protein SEC22 OS=Ashbya gossypii GN=SEC22 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.729e-38
Identity = 81/204 (39.71%), Postives = 132/204 (64.71%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQ-IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 703
            M+K T+I R  DGLPL   +DD  D   A+  K++VK L    +     A+  ++E+G Y  HY+ +  V Y+ + +R YP+ LAF YL ++++EFE   G + ++ + RPYAF+ FD F+QKTKK+Y D R Q N+ +LN +L  V QIMT+N++++L  G+ LD++S++S+ L  +S+ Y   A+ +N   L+ ++APVA++
Sbjct:    1 MIKSTLIFR-DDGLPLCSSVDDDTDPSLADQ-KKKVKVLISRFT--PQSANEATLESGAYEMHYVRQQSVVYIVIVERGYPRNLAFAYLANVRHEFEHSYGNEYVKPSVRPYAFVSFDNFLQKTKKIYNDKRVQGNLDQLNSDLLGVKQIMTKNIEDLLYRGDSLDRMSDLSASLRQDSKKYRRSAQKINFDLLLSQYAPVALI 200          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SEC22_KLULA (Protein transport protein SEC22 OS=Kluyveromyces lactis GN=SEC22 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 82/204 (40.20%), Postives = 127/204 (62.25%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETA-ARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 703
            M++ T+I R  DGLPL   +DD  D    E  K++VK L    +     A+  ++E+G +  HYI    V Y+ + +R YP+ LAF YL D++ EFE   G Q+  +  RPY F+ FD F+QKTKK+Y D R Q N+ +LN +L  V QIMT+N++++L  G+ LD++S+MS+ L  +++ Y   A+ +N   LI ++AP+AI+
Sbjct:    1 MIRSTLIFR-EDGLPLCASVDDDTDPSLQEQ-KKKVKILISRFT--PTSANEATVESGDFEIHYIRLNTVVYIVVAERNYPRNLAFSYLADIQQEFEHSYGGQLSKSNVRPYEFVSFDNFLQKTKKVYNDKRVQGNMDQLNQDLKGVKQIMTKNIEDLLYRGDSLDKMSDMSASLRQDAKKYRASAQKINFDLLISQYAPIAII 200          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SEC22_YEAST (Protein transport protein SEC22 OS=Saccharomyces cerevisiae GN=SEC22 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 80/204 (39.22%), Postives = 121/204 (59.31%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQI-ETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 703
            M+K T+I R  DGLPL   +D+  D    E  KQ+VK +   L+     A+  ++E+G +  HY+ +  V Y  +C+  YP+ LAF YL D+  EFE     +  +   RPY F+ FD F+Q TKK Y D + Q N+ +LN EL  V QIM++N++++L  G+ LD++S+MSS L   S+ Y   A+ +N   LI ++AP+ IV
Sbjct:    1 MIKSTLIYR-EDGLPLCTSVDNENDPSLFEQ-KQKVKIVVSRLT--PQSATEATLESGSFEIHYLKKSMVYYFVICESGYPRNLAFSYLNDIAQEFEHSFANEYPKPTVRPYQFVNFDNFLQMTKKSYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLDKMSDMSSSLKETSKRYRKSAQKINFDLLISQYAPIVIV 200          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SEC22_CANGA (Protein transport protein SEC22 OS=Candida glabrata GN=SEC22 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 73/204 (35.78%), Postives = 119/204 (58.33%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQI-ETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 703
            M+K T++ R  DGLPL   +DD  D+ D  + +Q+ +            A+  ++E+     HYI +  V Y  +C+  YP+ LAF YL D+  EF+     ++ +   RPYAF  FDTF+Q+TKK Y D + Q N+ +LN EL  V QIM++N++++L  G+ L+++ +MS+ L   S+ Y   A+ +N   LI ++AP+ +V
Sbjct:    1 MIKSTVVYR-DDGLPLCSSVDD--DISDLSLNEQKKRIKMVVSRMTPQSANEATLESKDSEIHYIRQQGVIYFVICEAGYPRNLAFSYLNDVAVEFQHSYSNELSKPTIRPYAFASFDTFLQRTKKAYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLEKMDDMSNSLKISSKKYRKSAQKINFDLLISQYAPIVMV 201          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SC22A_MOUSE (Vesicle-trafficking protein SEC22a OS=Mus musculus GN=Sec22a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNE-ASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 532
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQFPDRCTLKTGRYNINFISSLGVSYMMLCSENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEI 145          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SC22A_HUMAN (Vesicle-trafficking protein SEC22a OS=Homo sapiens GN=SEC22A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEA-SRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 532
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEI 145          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SC22A_MACFA (Vesicle-trafficking protein SEC22a OS=Macaca fascicularis GN=SEC22A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEA-SRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 532
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG Y  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVIRVRDGLPLSASTD-----YEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTDNYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEI 145          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: SC22A_RAT (Vesicle-trafficking protein SEC22a OS=Rattus norvegicus GN=Sec22a PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   95 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNE-ASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEF-ERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 532
            M+    + RV DGLPL+   D      +     Q+ +  FK LSR   +   R +++TG +  ++I    V Y+ +C   YP  LAF +L++L+ EF    N  +  TA RPY FI+FD FIQ+TK+ Y + R+      L+D   E+
Sbjct:    3 MILSASVVRVRDGLPLSASTDC-----EQSAGVQECRKYFKMLSRKLAQFPDRCTLKTGRHNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEI 145          
The following BLAST results are available for this feature:
BLAST of FC925058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEC22_YARLI6.568e-4343.00Protein transport protein SEC22 OS=Yarrowia lipoly... [more]
SEC22_SCHPO3.051e-4042.41Protein transport protein sec22 OS=Schizosaccharom... [more]
SEC22_ASHGO3.729e-3839.71Protein transport protein SEC22 OS=Ashbya gossypii... [more]
SEC22_KLULA5.385e-3740.20Protein transport protein SEC22 OS=Kluyveromyces l... [more]
SEC22_YEAST1.915e-3439.22Protein transport protein SEC22 OS=Saccharomyces c... [more]
SEC22_CANGA8.897e-3235.78Protein transport protein SEC22 OS=Candida glabrat... [more]
SC22A_MOUSE1.379e-1635.14Vesicle-trafficking protein SEC22a OS=Mus musculus... [more]
SC22A_HUMAN2.352e-1635.14Vesicle-trafficking protein SEC22a OS=Homo sapiens... [more]
SC22A_MACFA4.012e-1635.14Vesicle-trafficking protein SEC22a OS=Macaca fasci... [more]
SC22A_RAT8.938e-1634.46Vesicle-trafficking protein SEC22a OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA15FM1 TF Citrus clementina cDNA clone KN0AAP3YA15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925058 ID=FC925058; Name=FC925058; organism=Citrus clementina; type=EST; length=711bp
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTATGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACACGTACCCAGCGGAATA
TTGCAAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGCTGATAAGGCAA
AAGATTTGAATCGACAGGCTTTAATTCGGAAATGGGCTCCTGTGGCCATT
GTGTTGGGGGT
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