FC925058

Overview
NameFC925058
Unique NameFC925058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10234 contig Ccv1_Contig10234:51..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 46/156 (29.49%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  215 KNLSRGQNEASRMSIETGPYVFH-YIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNG-AQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALI 676
            K ++   N   R  +E   YVFH Y     +C +   D+ YP ++A+  L  + +EF   N   + E+ A   +F + DT++ K    YQD +    I ++  EL E   ++ + ++ VL  GEKLD + + S  L+++SR++   AK  N   +I
Sbjct:   45 KTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVTLSFPELDTYLSK----YQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAKKQNSCCII 196          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 41/163 (25.15%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  221 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVL 706
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + +++    +A+   ++ E+  IM RN+  V   GEKL+ + + +  L   S  +   +++L R   ++      I++
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKYHSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIII 194          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 40/163 (24.54%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  221 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVL 706
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + ++   + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +   +++L R   ++     AI++
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVKLTAIIV 194          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 41/163 (25.15%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  221 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVL 706
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + ++   + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +   +++L R A+  K   + I++
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR-AMCMKNIKLTIII 193          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 39/163 (23.93%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  221 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVL 706
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + +    + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +   +++L R   ++      I++
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIII 194          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 39/163 (23.93%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  221 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVL 706
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + +    + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +   +++L R   ++      I++
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIII 194          
BLAST of FC925058 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 39/163 (23.93%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  221 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVL 706
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + + +    + +   ++ E+  IM RN+  V   GE+L+ + + +  L   S  +   +++L R   ++      I++
Sbjct:   33 LAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIII 194          
The following BLAST results are available for this feature:
BLAST of FC925058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YKT6_SCHPO2.434e-1329.49Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
VAMP7_CHICK7.082e-1325.15Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT4.591e-1224.54Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_MOUSE1.336e-1125.15Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_HUMAN1.744e-1123.93Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN1.744e-1123.93Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB2.278e-1123.93Vesicle-associated membrane protein 7 OS=Pongo abe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA15FM1 TF Citrus clementina cDNA clone KN0AAP3YA15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925058 ID=FC925058; Name=FC925058; organism=Citrus clementina; type=EST; length=711bp
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTATGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACACGTACCCAGCGGAATA
TTGCAAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGCTGATAAGGCAA
AAGATTTGAATCGACAGGCTTTAATTCGGAAATGGGCTCCTGTGGCCATT
GTGTTGGGGGT
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