FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1937 contig Ccv1_Contig1937:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPE1_HUMAN (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.154e-14
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR 210
            RG G  FG DVT + L    L + +RSHE K EGYEI HDGK++T+FSA NY ++  N+GA+I+
Sbjct:  376 RGGGCYFGPDVTSKILNKYQLKMLIRSHECKPEGYEICHDGKVVTIFSASNYYEEGSNRGAYIK 439          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPE2_HUMAN (Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens GN=PPEF2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.344e-14
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSA 255
            RG G  FG DVT++ LQ  ++   +RSHE K EGYE  H+ K++T+FSA NY +   N+GA+++   P L P++V + A
Sbjct:  461 RGGGCYFGPDVTQQLLQKYNMQFLIRSHECKPEGYEFCHNRKVLTIFSASNYYEVGSNRGAYVKL-GPALTPHIVQYQA 538          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP12_SCHPO (Serine/threonine-protein phosphatase PP1-2 OS=Schizosaccharomyces pombe GN=sds21 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  RFLQ + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  217 RGVSYTFGADVVSRFLQKHDLDLICRAHQVVEDGYEFFGKRQLVTIFSAPNYCGEFDNVGAMM 279          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1L_ENCCU (Probable serine/threonine-protein phosphatase ECU05_0440 OS=Encephalitozoon cuniculi GN=ECU05_0440 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKG 198
            R  G+ FGADVT RFL+ N LDL VRSH+  D+GY + H GK++T+FSAP Y    G+KG
Sbjct:  356 RRAGVVFGADVTARFLERNGLDLLVRSHQAVDDGYRVHHGGKVVTIFSAPEY---EGSKG 412          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: RDGC_DROME (Serine/threonine-protein phosphatase rdgC OS=Drosophila melanogaster GN=rdgC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTF 249
            RG G+ FG DVT  FLQ + L   +RSHE K  G+E  HD K+IT+FSA NY     NKGA+IR     L P+ V +
Sbjct:  333 RGAGVWFGPDVTDNFLQRHRLSYVIRSHECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLN-NQLMPHFVQY 408          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPP6_DROME (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Drosophila melanogaster GN=PpV PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G  FG +VTK F+  N+L+L  R+H++ +EG +   DGKL+TV+SAPNYC + GN  A + FE    K     F AVP
Sbjct:  208 RGAGWLFGHNVTKDFMAINNLNLICRAHQLVNEGIKYMFDGKLVTVWSAPNYCYRCGNVAAILSFETAE-KRQTKIFLAVP 287          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1_BRAOL (Serine/threonine-protein phosphatase PP1 OS=Brassica oleracea GN=PP1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RGV  +FGAD    FLQ N +DL  R+H+V ++GYE   + +++TVFSAPNYC +  N GA +  +
Sbjct:  235 RGVSYTFGADTVAEFLQKNDMDLICRAHQVVEDGYEFFAERQVVTVFSAPNYCGEFDNAGAMMSID 300          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1_NEUCR (Serine/threonine-protein phosphatase PP1 OS=Neurospora crassa GN=ppp-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 228
            RGV  +FG DV  RFLQ + +DL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +  +   L
Sbjct:  221 RGVSFTFGPDVVSRFLQKHDMDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLL 290          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1_EMENI (Serine/threonine-protein phosphatase PP1 OS=Emericella nidulans GN=bimG PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 228
            RGV  +FG DV  RFLQ + +DL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +  +   L
Sbjct:  220 RGVSFTFGPDVVSRFLQKHDMDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLL 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGAD    FL+ + LDL  R+H+V ++GYE   D +L+T+FSAPNYC +  N GA +
Sbjct:  232 RGVSYTFGADKVSEFLEKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMM 294          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PPE1_HUMAN7.154e-1453.13Serine/threonine-protein phosphatase with EF-hands... [more]
PPE2_HUMAN9.344e-1444.30Serine/threonine-protein phosphatase with EF-hands... [more]
PP12_SCHPO2.719e-1352.38Serine/threonine-protein phosphatase PP1-2 OS=Schi... [more]
PP1L_ENCCU4.637e-1356.67Probable serine/threonine-protein phosphatase ECU0... [more]
RDGC_DROME6.057e-1349.35Serine/threonine-protein phosphatase rdgC OS=Droso... [more]
PPP6_DROME6.057e-1346.91Serine/threonine-protein phosphatase 6 catalytic s... [more]
PP1_BRAOL7.910e-1346.97Serine/threonine-protein phosphatase PP1 OS=Brassi... [more]
PP1_NEUCR1.033e-1245.71Serine/threonine-protein phosphatase PP1 OS=Neuros... [more]
PP1_EMENI1.033e-1245.71Serine/threonine-protein phosphatase PP1 OS=Emeric... [more]
PP1_ORYSJ1.349e-1249.21Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
back to top