FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_CANFA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Canis familiaris GN=PPP1CB PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+ +FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVILFSAPNYCGEFDNAGGMM 282          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RG+  +FGADV   FL  N LDL  R H+V ++GYE     +L+T+FSAPNY  +  N GA +
Sbjct:  223 RGISCTFGADVVADFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALL 285          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP12_TRYBB (Serine/threonine-protein phosphatase PP1(5.9) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +F   V K F +   LDL  R+H+V D GYE     +L+TVFSAPNYCD+  N GAF+
Sbjct:  260 RGVSWTFSESVVKSFNKKFDLDLICRAHQVVDAGYEFFAARQLVTVFSAPNYCDEFDNAGAFM 322          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP11_TRYBB (Serine/threonine-protein phosphatase PP1(4.8) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +F   V K F +   LDL  R+H+V D GYE     +L+TVFSAPNYCD+  N GAF+
Sbjct:  260 RGVSWTFSESVVKSFNKKFDLDLICRAHQVVDAGYEFFAARQLVTVFSAPNYCDEFDNAGAFM 322          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEEL (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis elegans GN=gsp-1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG DV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  221 RGVSFTFGPDVVAKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEBR (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis briggsae GN=gsp-1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG DV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  221 RGVSFTFGPDVVAKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG D    FL  + +DL  R+H+V ++GYE   + +L+T+FSAPNYC +  N GA +
Sbjct:  232 RGVSYTFGPDKVAEFLMQHDMDLVCRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFDNAGAMM 294          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: BSU1_ARATH (Serine/threonine-protein phosphatase BSU1 OS=Arabidopsis thaliana GN=BSU1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   19 RGVGL-SFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVPHPDV*PLA 285
            RG G+ SFG D+ K FL+ N L++ +R+HE   +G+E   DG+LITVFSA NYC    N GA +      +  ++V +  + HP   P++
Sbjct:  679 RGEGVVSFGPDIVKAFLERNGLEMILRAHECVIDGFERFADGRLITVFSATNYCGTAQNAGAIL-----VIGRDMVIYPKLIHPHPPPIS 763          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A4_YEAST (Serine/threonine-protein phosphatase PP2A-like PPG1 OS=Saccharomyces cerevisiae GN=PPG1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RG G +FG  V ++FL+ N ++   R+H++ +EGY+I  DG + TV+SAPNYC + GNK + +
Sbjct:  220 RGAGYTFGRSVVEKFLRMNDMNRIYRAHQLCNEGYQIYFDGLVTTVWSAPNYCYRCGNKASIL 282          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A4_ARATH (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 26/66 (39.39%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RG G +FG D++++F   N+L L  R+H++  +GY   H+ K++T+FSAPNYC + GN  + +  +
Sbjct:  218 RGAGYTFGQDISEQFNHTNNLKLIARAHQLVMDGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVD 283          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP1B_CANFA4.340e-1146.03Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP19_ARATH4.340e-1147.62Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
PP12_TRYBB4.340e-1150.79Serine/threonine-protein phosphatase PP1(5.9) OS=T... [more]
PP11_TRYBB4.340e-1150.79Serine/threonine-protein phosphatase PP1(4.8) OS=T... [more]
GLC7A_CAEEL4.340e-1146.03Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
GLC7A_CAEBR4.340e-1146.03Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
PP11_TOBAC5.669e-1144.44Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
BSU1_ARATH5.669e-1140.00Serine/threonine-protein phosphatase BSU1 OS=Arabi... [more]
PP2A4_YEAST7.404e-1144.44Serine/threonine-protein phosphatase PP2A-like PPG... [more]
PP2A4_ARATH7.404e-1139.39Serine/threonine-protein phosphatase PP2A-4 cataly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
back to top