FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A1_NEUCR (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Neurospora crassa GN=pph-1 PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D+++ F  +N L L  R+H++  EGY    D  ++T+FSAPNYC + GN+ A +  +   LK   + F   P
Sbjct:  232 RGAGYTFGQDISEAFNHNNGLTLIARAHQLVMEGYNWSQDRNVVTIFSAPNYCYRCGNQAAIMEID-EHLKYTFLQFDPCP 311          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEEL (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis elegans GN=gsp-2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG +V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G+ +
Sbjct:  220 RGVSFTFGPEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGSMM 282          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEBR (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG +V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G+ +
Sbjct:  220 RGVSFTFGPEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGSMM 282          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A_MEDSA (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Medicago sativa GN=PP2A PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 26/66 (39.39%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RG G +FG D++++F   NSL L  R+H++  +G+   H+ K++T+FSAPNYC + GN  + +  +
Sbjct:  218 RGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVD 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A_ACECL (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Acetabularia cliftonii PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RG G +FG D++++F   NSL L  R+H++  EGY   H+  ++T+FSAPNYC + GN  A +
Sbjct:  211 RGAGYTFGQDISEQFNVRNSLKLVARAHQLVMEGYNWSHEKNVVTIFSAPNYCYRCGNMAAIM 273          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A2_ERYGR (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Erysiphe graminis subsp. hordei GN=PP2A-2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D+++ F  +N L L  R+H++  EGY    D  ++T+FSAPNYC + GN+ A +  +   LK   + F   P
Sbjct:  233 RGAGYTFGQDISEAFNHNNGLTLVARAHQLVMEGYNWSQDRNVVTIFSAPNYCYRCGNQAAIMEID-EHLKYTFLQFDPCP 312          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A1_EMENI (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Emericella nidulans GN=pphA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D+++ F  +N L L  R+H++  EGY    D  ++T+FSAPNYC + GN+ A +  +   LK   + F   P
Sbjct:  234 RGAGYTFGQDISEAFNHNNGLTLVARAHQLVMEGYNWSQDRNVVTIFSAPNYCYRCGNQAAIMEID-EHLKYTFLQFDPCP 313          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG DV   FL  N LDL  R H+V ++GYE     +L+T+FSAPNY  +  N GA +
Sbjct:  215 RGVSCTFGPDVVAEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALL 277          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1_DICDI (Serine/threonine-protein phosphatase PP1 OS=Dictyostelium discoideum GN=pppB PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV + FL+ + LDL  R+H+V ++GYE     +L+T+FSAPNY  +  N GA +
Sbjct:  217 RGVSYTFGADVVESFLKKHDLDLVCRAHQVVEDGYEFFAKRQLVTLFSAPNYFGEFDNAGAMM 279          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP2A1_NEUCR7.404e-1138.27Serine/threonine-protein phosphatase PP2A catalyti... [more]
GLC7B_CAEEL7.404e-1144.44Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
GLC7B_CAEBR7.404e-1144.44Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
PP2A_MEDSA9.670e-1139.39Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A_ACECL9.670e-1144.44Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A2_ERYGR9.670e-1138.27Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A1_EMENI9.670e-1138.27Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP1_PHAVU9.670e-1147.62Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]
PP1_DICDI9.670e-1147.62Serine/threonine-protein phosphatase PP1 OS=Dictyo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
back to top