FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1937 contig Ccv1_Contig1937:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGAD  + FLQ + LDL  R+H+V ++GYE   + +L+T+FSAPNYC +  N GA +
Sbjct:  218 RGVSYTFGADKVEEFLQTHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMM 280          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPH6_CAEEL (Putative serine/threonine-protein phosphatase pph-6 OS=Caenorhabditis elegans GN=pph-6 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G  FGA VT+ FL +N L L  RSH++ DEG++   + KL TV+SAPNYC + GN  A   FE      +   F+AVP
Sbjct:  237 RGAGFVFGAKVTEEFLMNNDLSLLCRSHQLVDEGFKYMFNEKLATVWSAPNYCYRCGNAAAV--FEIDGNNRSTKYFNAVP 315          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2AB_DICDI (Probable serine/threonine-protein phosphatase 2A catalytic subunit B OS=Dictyostelium discoideum GN=DDB_G0283187 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G S+G DVT RFLQ+N +   +R+H++  +GY+   D KL TV+SAPNYC++ GN  + +      L+    T++A P
Sbjct:  213 RGAGYSYGKDVTLRFLQNNKMQHIIRAHQLCMDGYQTLFDNKLSTVWSAPNYCNRCGNMASIVEVN-EKLERYFNTYAAAP 292          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGAD    FL+ + LDL  R+H+V ++GYE     KL+TVFSAPNYC +  N GA +
Sbjct:  218 RGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMM 280          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP13_DROME (Serine/threonine-protein phosphatase alpha-3 isoform OS=Drosophila melanogaster GN=Pp1-13C PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FLQ + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  219 RGVSFTFGAEVVVKFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 281          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP12_YEAST (Serine/threonine-protein phosphatase PP1-2 OS=Saccharomyces cerevisiae GN=GLC7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.926e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 228
            RGV  +FG DV  RFLQ   ++L  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +  +   L
Sbjct:  220 RGVSFTFGPDVVNRFLQKQDMELICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLL 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP4C_ASHGO (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Ashbya gossypii GN=PPH3 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVPHPD 270
            RG G  FG +   +FL  N + L  R+H++  EGY+   DG L+TV+SAPNYC + GN  A +R +   L  N   F AVP  D
Sbjct:  210 RGAGFLFGKNEVDQFLHRNDISLIARAHQLVMEGYKEMFDGGLVTVWSAPNYCYRCGNVAAVLRID-DDLSRNYTIFEAVPAQD 292          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGAD    FLQ + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  218 RGVSYTFGADKVAEFLQTHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGALM 280          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP11_SCHPO (Serine/threonine-protein phosphatase PP1-1 OS=Schizosaccharomyces pombe GN=dis2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 228
            RGV  +FG DV  RFL  + +DL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +  +   L
Sbjct:  220 RGVSFTFGPDVVSRFLHKHDMDLVCRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLL 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RGV  +FGAD    FL+ + +DL  R+H+V ++GYE   + +L+TVFSAPNYC +  N GA +  +
Sbjct:  233 RGVSYTFGADKVAEFLEKHDMDLICRAHQVVEDGYEFFAERQLVTVFSAPNYCGEFDNAGAMMSID 298          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP13_ARATH1.762e-1249.21Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PPH6_CAEEL2.302e-1246.91Putative serine/threonine-protein phosphatase pph-... [more]
PP2AB_DICDI3.006e-1241.98Probable serine/threonine-protein phosphatase 2A c... [more]
PP1_MEDVA3.006e-1250.79Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP13_DROME3.006e-1249.21Serine/threonine-protein phosphatase alpha-3 isofo... [more]
PP12_YEAST3.926e-1244.29Serine/threonine-protein phosphatase PP1-2 OS=Sacc... [more]
PP4C_ASHGO5.127e-1242.86Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP16_ARATH5.127e-1249.21Serine/threonine-protein phosphatase PP1 isozyme 6... [more]
PP11_SCHPO5.127e-1244.29Serine/threonine-protein phosphatase PP1-1 OS=Schi... [more]
PP11_ARATH5.127e-1245.45Serine/threonine-protein phosphatase PP1 isozyme 1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
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