FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1937 contig Ccv1_Contig1937:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A5_TOBAC (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Nicotiana tabacum GN=NPP5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RG G +FG D++++F Q N+L L  R+H++  EGY   H+ K++T+FSAPNYC + GN  + +  +
Sbjct:  219 RGAGYTFGQDISEQFHQTNNLKLIARAHQLVMEGYNWSHEQKVVTIFSAPNYCYRCGNMASILEVD 284          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGAD    FL  N +DL  R+H+V ++GYE   D +L+T+FSAPNYC +  N GA +
Sbjct:  227 RGVSYTFGADKVAEFLIKNDMDLVCRAHQVVEDGYEFFADRQLVTMFSAPNYCGEFDNAGALM 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPIG_XENTR (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Xenopus tropicalis GN=ppp1cc PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP4C_DICDI (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Dictyostelium discoideum GN=ppp4c PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G  FG DV ++F  DN+L+   R+H++  EG++   +  L+TV+SAPNYC + GN  A ++ +   LK N   F A P
Sbjct:  209 RGAGFLFGEDVVQKFNHDNNLEFICRAHQLVMEGFKYMFNETLVTVWSAPNYCYRCGNVAAILQLD-ENLKKNFAIFEAAP 288          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1G_RAT (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Rattus norvegicus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1G_MOUSE (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Mus musculus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1G_HUMAN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Homo sapiens GN=PPP1CC PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1G_CANFA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Canis familiaris GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1G_BOVIN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Bos taurus GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1GB_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit B OS=Xenopus laevis GN=ppp1cc-B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP2A5_TOBAC6.696e-1242.42Serine/threonine-protein phosphatase PP2A-5 cataly... [more]
PP15_ARATH6.696e-1249.21Serine/threonine-protein phosphatase PP1 isozyme 5... [more]
PPIG_XENTR8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP4C_DICDI8.746e-1240.74Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP1G_RAT8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_MOUSE8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_HUMAN8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_CANFA8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_BOVIN8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GB_XENLA8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
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