FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1937 contig Ccv1_Contig1937:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1GA_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit A OS=Xenopus laevis GN=ppp1cc-A PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_XENTR (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus tropicalis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_XENLA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus laevis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_RAT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Rattus norvegicus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_RABIT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_PONAB (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Pongo abelii GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_PIG (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Sus scrofa GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_MOUSE (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Mus musculus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_HUMAN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
[Close]
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_CHICK (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Gallus gallus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP1GA_XENLA8.746e-1247.62Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1B_XENTR8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_XENLA8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RAT8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RABIT8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PONAB8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PIG8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_MOUSE8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_HUMAN8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_CHICK8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
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