FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1937 contig Ccv1_Contig1937:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_BOVIN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Bos taurus GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGADV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMM 282          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1A_RAT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Rattus norvegicus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1A_RABIT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1A_MOUSE (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Mus musculus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1A_HUMAN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1A_CANFA (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Canis familiaris GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1A_BOVIN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Bos taurus GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 283          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP11_DROME (Serine/threonine-protein phosphatase alpha-1 isoform OS=Drosophila melanogaster GN=Pp1alpha-96A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FLQ +  DL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  219 RGVSFTFGAEVVGKFLQKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 281          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEBR (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis briggsae GN=pph-4.1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G  FGAD +K F + NS+DL  R+H++  EGY+   + K++TV+SAPNYC + GN  A +  +   L      F A P
Sbjct:  237 RGAGYLFGADASKTFCEANSVDLICRAHQLVMEGYKWHFNEKVLTVWSAPNYCYRCGNVAAILELD-ENLNREFTIFEAAP 316          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2AB_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Rattus norvegicus GN=Ppp2cb PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D+++ F   N L L  R+H++  EGY   HD  ++T+FSAPNYC + GN+ A +  +  TLK + + F   P
Sbjct:  214 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELD-DTLKYSFLQFDPAP 293          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP1B_BOVIN8.746e-1247.62Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1A_RAT8.746e-1247.62Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_RABIT8.746e-1247.62Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_MOUSE8.746e-1247.62Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_HUMAN8.746e-1247.62Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_CANFA8.746e-1247.62Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_BOVIN8.746e-1247.62Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP11_DROME8.746e-1247.62Serine/threonine-protein phosphatase alpha-1 isofo... [more]
PP4C1_CAEBR1.142e-1141.98Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2AB_RAT1.142e-1140.74Serine/threonine-protein phosphatase 2A catalytic ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
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