FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2AA_CHICK (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Gallus gallus GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D+++ F   N L L  R+H++  EGY   HD  ++T+FSAPNYC + GN+ A +  +  TLK + + F   P
Sbjct:  214 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELD-DTLKYSFLQFDPAP 293          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2AA_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Bos taurus GN=PPP2CA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D+++ F   N L L  R+H++  EGY   HD  ++T+FSAPNYC + GN+ A +  +  TLK + + F   P
Sbjct:  214 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELD-DTLKYSFLQFDPAP 293          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG D    FL  + LDL  R+H+V ++GYE   D +L+TVFSAPNYC +  N GA +
Sbjct:  231 RGVSYTFGPDKVSEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTVFSAPNYCGEFDNAGAMM 293          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP12_DROME (Serine/threonine-protein phosphatase alpha-2 isoform OS=Drosophila melanogaster GN=Pp1-87B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FGA+V  +FLQ +  DL  R+H+V ++GYE      L+T+FSAPNYC +  N GA +
Sbjct:  219 RGVSFTFGAEVVAKFLQKHEFDLICRAHQVVEDGYEFFAKRMLVTLFSAPNYCGEFDNAGAMM 281          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP12_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG D    FL  N +DL  R+H+V ++GYE   D +L+T+FSAPNYC +  N GA +
Sbjct:  227 RGVSYTFGPDKVAEFLIKNDMDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMM 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPP6_RAT (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Rattus norvegicus GN=Ppp6c PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF-EAPTLKPNVVTFSAVP 261
            RG G  FGA VT  F+  N+L L  R+H++  EGY+   D KL+TV+SAPNYC + GN  + + F +  T +P +  F AVP
Sbjct:  210 RGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKL--FRAVP 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPP6_MOUSE (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Mus musculus GN=Ppp6c PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF-EAPTLKPNVVTFSAVP 261
            RG G  FGA VT  F+  N+L L  R+H++  EGY+   D KL+TV+SAPNYC + GN  + + F +  T +P +  F AVP
Sbjct:  210 RGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKL--FRAVP 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PPP6_HUMAN (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Homo sapiens GN=PPP6C PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF-EAPTLKPNVVTFSAVP 261
            RG G  FGA VT  F+  N+L L  R+H++  EGY+   D KL+TV+SAPNYC + GN  + + F +  T +P +  F AVP
Sbjct:  210 RGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKL--FRAVP 289          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A2_SCHPO (Major serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D+++ F   N L L  R+H++  EG+   HDG ++T+FSAPNYC + GN+ A +  +  T+    + F   P
Sbjct:  227 RGAGYTFGQDISETFNHANGLSLTARAHQLVMEGFNWAHDGDVVTIFSAPNYCYRCGNQAAILEVD-DTMNQVFLQFDPAP 306          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP17_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 7 OS=Arabidopsis thaliana GN=TOPP7 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    7 GPF*RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            GP  RGV  +FG+D+   FL+   LDL  R+H+V ++G+E   + +L+T+FSAPNYC +  N GA +
Sbjct:  213 GPNDRGVSYTFGSDIVSGFLKRLDLDLICRAHQVVEDGFEFFANKQLVTIFSAPNYCGEFDNAGAMM 279          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP2AA_CHICK1.142e-1140.74Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AA_BOVIN1.142e-1140.74Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP14_ARATH1.142e-1149.21Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP12_DROME1.142e-1147.62Serine/threonine-protein phosphatase alpha-2 isofo... [more]
PP12_ARATH1.142e-1147.62Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PPP6_RAT1.492e-1145.12Serine/threonine-protein phosphatase 6 catalytic s... [more]
PPP6_MOUSE1.492e-1145.12Serine/threonine-protein phosphatase 6 catalytic s... [more]
PPP6_HUMAN1.492e-1145.12Serine/threonine-protein phosphatase 6 catalytic s... [more]
PP2A2_SCHPO1.492e-1138.27Major serine/threonine-protein phosphatase PP2A-2 ... [more]
PP17_ARATH1.492e-1144.78Serine/threonine-protein phosphatase PP1 isozyme 7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
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